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ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers

BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng

Bioinformatics 30 (12), 1771-1773, 2014

Exigences : US National Institutes of Health

PROMALS3D: a tool for multiple protein sequence and structure alignments

J Pei, BH Kim, NV Grishin

Nucleic acids research 36 (7), 2295-2300, 2008

Exigences : US National Institutes of Health, Howard Hughes Medical Institute

[PDF] wiley.com

Structure prediction for CASP8 with all‐atom refinement using Rosetta

S Raman, R Vernon, J Thompson, M Tyka, R Sadreyev, J Pei, D Kim, ...

Proteins: Structure, Function, and Bioinformatics 77 (S9), 89-99, 2009

Exigences : US National Institutes of Health

Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ...

Nucleic acids research 41 (D1), D171-D176, 2012

Exigences : US National Institutes of Health

[PDF] plos.org

ECOD: an evolutionary classification of protein domains

H Cheng, RD Schaeffer, Y Liao, LN Kinch, J Pei, S Shi, BH Kim, ...

PLoS computational biology 10 (12), e1003926, 2014

Exigences : US National Institutes of Health, Howard Hughes Medical Institute

[HTML] nature.com

Principles of regulatory information conservation between mouse and human

Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ...

Nature 515 (7527), 371-375, 2014

Exigences : US Department of Energy, US National Institutes of Health

Expression profiling of nuclear receptors in human and mouse embryonic stem cells

CQ Xie, Y Jeong, M Fu, AL Bookout, MT Garcia-Barrio, T Sun, B Kim, ...

Molecular endocrinology 23 (5), 724-733, 2009

Exigences : US National Institutes of Health, Howard Hughes Medical Institute

[HTML] nih.gov

Discrete–continuous duality of protein structure space

RI Sadreyev, BH Kim, NV Grishin

Current opinion in structural biology 19 (3), 321-328, 2009

Exigences : US National Institutes of Health, Howard Hughes Medical Institute

[HTML] plos.org

The full transcription map of mouse papillomavirus type 1 (MmuPV1) in mouse wart tissues

XY Xue, V Majerciak, A Uberoi, BH Kim, D Gotte, X Chen, M Cam, ...

PLoS pathogens 13 (11), e1006715, 2017

Exigences : US Department of Defense, US National Institutes of Health

[HTML] cshlp.org

HNRNPH1-dependent splicing of a fusion oncogene reveals a targetable RNA G-quadruplex interaction

C Neckles, RE Boer, N Aboreden, AM Cross, RL Walker, BH Kim, S Kim, ...

Rna 25 (12), 1731-1750, 2019

Exigences : US National Institutes of Health

[PDF] nature.com

In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells

T Kim, OH Echeagaray, BJ Wang, A Casillas, KM Broughton, BH Kim, ...

Scientific reports 8 (1), 12060, 2018

Exigences : US National Institutes of Health, Leducq Foundation, USA

Analysis of CASP8 targets, predictions and assessment methods

SY Shi, J Pei, RI Sadreyev, LN Kinch, I Majumdar, J Tong, H Cheng, ...

Database: the journal of biological databases and curation 2009, bap003, 2009

Exigences : US National Institutes of Health

[HTML] jbc.org

O-GlcNAcase is an RNA polymerase II elongation factor coupled to pausing factors SPT5 and TIF1β

M Resto, BH Kim, AG Fernandez, BJ Abraham, K Zhao, BA Lewis

Journal of Biological Chemistry 291 (43), 22703-22713, 2016

Exigences : US National Institutes of Health

COMPASS server for homology detection: improved statistical accuracy, speed and functionality

RI Sadreyev, M Tang, BH Kim, NV Grishin

Nucleic acids research 37 (suppl_2), W90-W94, 2009

Exigences : US National Institutes of Health, Howard Hughes Medical Institute

[HTML] plos.org

Predictive sequence analysis of the Candidatus Liberibacter asiaticus proteome

Q Cong, LN Kinch, BH Kim, NV Grishin

PloS one 7 (7), e41071, 2012

Exigences : US National Institutes of Health, Howard Hughes Medical Institute

[HTML] nih.gov

Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets

H Cheng, BH Kim, NV Grishin

Journal of molecular biology 377 (4), 1265-1278, 2008

Exigences : US National Institutes of Health

[HTML] sciencedirect.com

Murine pre–B-cell ALL induces T-cell dysfunction not fully reversed by introduction of a chimeric antigen receptor

H Qin, K Ishii, S Nguyen, PP Su, CR Burk, BH Kim, BB Duncan, S Tarun, ...

Blood, The Journal of the American Society of Hematology 132 (18), 1899-1910, 2018

Exigences : US National Institutes of Health

[HTML] sciencedirect.com

Novel Paju Apodemus paramyxovirus 1 and 2, harbored by Apodemus agrarius in the Republic of Korea

SH Lee, JS No, K Kim, S Budhathoki, K Park, GY Lee, S Cho, BH Kim, ...

Virology 562, 40-49, 2021

Exigences : US Department of Defense

HorA web server to infer homology between proteins using sequence and structural similarity

BH Kim, H Cheng, NV Grishin

Nucleic acids research 37 (suppl_2), W532-W538, 2009

Exigences : US National Institutes of Health, Howard Hughes Medical Institute