Kathryn Holt

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Ryan WickUniversity of MelbourneAdresse e-mail validée de unimelb.edu.au
Kelly L. WyresMonash UniversityAdresse e-mail validée de monash.edu
Stephen BakerUniversity of CambridgeAdresse e-mail validée de medschl.cam.ac.uk
Michael InouyeProfessor of Systems Genomics & Population Health, University of Cambridge; Baker InstituteAdresse e-mail validée de medschl.cam.ac.uk
François-Xavier WeillProfessor, Institut Pasteur, Paris, FranceAdresse e-mail validée de pasteur.fr
John WainQuadram Institute BiosciencesAdresse e-mail validée de jidc.org
Justin ZobelComputing and Information Systems, University of MelbourneAdresse e-mail validée de unimelb.edu.au
Robert A KingsleyGroup Leader at the Quadram Institute Bioscience, UKAdresse e-mail validée de quadram.ac.uk
Abhilasha KarkeyOxford University Clinical Research UnitAdresse e-mail validée de oucru.org
Mark Achtman FRSemeritus Professor University of Warwick, previously University College Cork and Max-PlanckAdresse e-mail validée de warwick.ac.uk
Sarah DunstanPeter Doherty Institute for Infection and Immunity, The University of MelbourneAdresse e-mail validée de unimelb.edu.au
Stephen BentleyWellcome Sanger InstituteAdresse e-mail validée de sanger.ac.uk
Simon R. HarrisSenior Program Officer, Bill & Melinda Gates FoundationAdresse e-mail validée de sanger.ac.uk
Tim StinearProfessor, University of MelbourneAdresse e-mail validée de unimelb.edu.au
Edward C HolmesUniversity of SydneyAdresse e-mail validée de sydney.edu.au
Minh-Duy PhanThe University of QueenslandAdresse e-mail validée de uq.edu.au
Ian GoodheadUniversity of SalfordAdresse e-mail validée de salford.ac.uk
Sebastien GagneuxSwiss Tropical and Public Health InstituteAdresse e-mail validée de swisstph.ch
Trevor D LawleyWellcome Trust Sanger InstituteAdresse e-mail validée de sanger.ac.uk
William HanageHarvard T H Chan School of Public HealthAdresse e-mail validée de hsph.harvard.edu

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Kathryn Holt

LSHTM & Monash University

Adresse e-mail validée de lshtm.ac.uk - Page d'accueil

microbial genomics & infection


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads RR Wick, LM Judd, CL Gorrie, KE Holt PLOS Computational Biology 13 (6), e1005595, 2017	6582	2017
Bandage: interactive visualization of de novo genome assemblies RR Wick, MB Schultz, J Zobel, KE Holt Bioinformatics 31 (20), 3350-2, 2015	2204	2015
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ... Nature genetics 45 (10), 1176-1182, 2013	1325	2013
Performance of neural network basecalling tools for Oxford Nanopore sequencing RR Wick, LM Judd, KE Holt Genome Biology 20 (1), 129, 2019	1303	2019
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ... Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015	1295	2015
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs M Inouye, H Dashnow, LA Raven, MB Schultz, BJ Pope, T Tomita, J Zobel, ... Genome Medicine 6 (11), 1-16, 2014	1043	2014
The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development SM Teo, D Mok, K Pham, M Kusel, M Serralha, N Troy, BJ Holt, BJ Hales, ... Cell Host and Microbe 17 (5), 704-715, 2015	999	2015
Completing bacterial genome assemblies with multiplex MinION sequencing RR Wick, LM Judd, CL Gorrie, KE Holt Microbial Genomics, 2017	848	2017
Population genomics of Klebsiella pneumoniae KL Wyres, MMC Lam, KE Holt Nature Reviews Microbiology 18 (6), 344-359, 2020	835	2020
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype RA Kingsley, CL Msefula, NR Thomson, S Kariuki, KE Holt, MA Gordon, ... Genome research 19 (12), 2279-2287, 2009	641	2009
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex MMC Lam, RR Wick, SC Watts, LT Cerdeira, KL Wyres, KE Holt Nature communications 12 (1), 4188, 2021	631	2021
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi KE Holt, J Parkhill, CJ Mazzoni, P Roumagnac, FX Weill, I Goodhead, ... Nature genetics 40 (8), 987-993, 2008	592	2008
Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria KL Wyres, KE Holt Current opinion in microbiology 45, 131-139, 2018	585	2018
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4 New England Journal of Medicine 365 (8), 718-724, 2011	547	2011
Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ... Clinical Infectious Diseases 65 (2), 208-215, 2017	537	2017
Identification of Klebsiella capsule synthesis loci from whole genome data K Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, KE Holt bioRxiv, 071415, 2016	503	2016
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ... Nature Genetics 47 (6), 632-639, 2015	502	2015
Evolutionary dynamics of Clostridium difficile over short and long time scales M He, M Sebaihia, TD Lawley, RA Stabler, LF Dawson, MJ Martin, KE Holt, ... Proceedings of the National Academy of Sciences 107 (16), 7527, 2010	436	2010
Polypolish: short-read polishing of long-read bacterial genome assemblies RR Wick, KE Holt PLOS Computational Biology 18 (1), e1009802, 2022	379	2022
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens S Baker, N Thomson, FX Weill, KE Holt Science 360 (6390), 733-738, 2018	357	2018

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