Alexander Favorov

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Olga FavorovaProf. of Mol Biol, RSMU, MoscowAdresse e-mail validée de cardio.ru
Elana J FertigDirector of Institute for Genome Sciences, University of Maryland School of MedicineAdresse e-mail validée de som.umaryland.edu
Vsevolod MakeevCancer Research UK, ManchesterAdresse e-mail validée de manchester.ac.uk
Daria GaykalovaAssociate Professor of Otorhinolaryngology - Head and Neck Surgery, University of MarylandAdresse e-mail validée de som.umaryland.edu
Ludmila DanilovaSKCCC at Johns HopkinsAdresse e-mail validée de jhmi.edu
Andrey MironovMoscow State University, dept Bioengineering and BioinformaticsAdresse e-mail validée de bioinf.fbb.msu.ru
Theresa GuoUniversity of California, San DiegoAdresse e-mail validée de health.ucsd.edu
Joseph CalifanoProfessor, Department of Surgery, University of California, San DiegoAdresse e-mail validée de ucsd.edu
Genevieve Stein-O'BrienAssistant Professor, Department of Neuroscience, Johns Hopkins UniversityAdresse e-mail validée de jhmi.edu
Emily FlamUniversity of PennsylvaniaAdresse e-mail validée de pennmedicine.upenn.edu
Dmitrijs LvovsJohns Hopkins UniversityAdresse e-mail validée de jh.edu
Giovanni ParmigianiProfessor Department of Data Science, DFCIAdresse e-mail validée de dfci.harvard.edu
Bahman AfsariNIH/NCIAdresse e-mail validée de jhu.edu
Ivan KulakovskiyInstitute of Protein Research RASAdresse e-mail validée de vigg.ru
Mikhail GelfandVice-President for Biomedical Research, SkoltechAdresse e-mail validée de skoltech.ru
Luciane Tsukamoto KagoharaJohns Hopkins UniversityAdresse e-mail validée de jhmi.edu
Vitalina Bashynska (Bashinskaya)O.M. MarzeIev Institute for Public Health NAMS UkraineAdresse e-mail validée de health.gov.ua
Leslie CopeJohns Hopkins UniversityAdresse e-mail validée de jhmi.edu
Yulia A MedvedevaResearch Center of Biotechnology RASAdresse e-mail validée de biengi.ac.ru
George ChurchHarvard Medical SchoolAdresse e-mail validée de harvard.edu

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Alexander Favorov

research [email protected]; senior fellow [email protected]

Adresse e-mail validée de sensi.org - Page d'accueil

Bioinformatics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014	1805	2014
Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005	1623	2005
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016	261	2016
Enter the matrix: factorization uncovers knowledge from omics GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ... Trends in Genetics 34 (10), 790-805, 2018	247	2018
A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans AV Favorov, TV Andreewski, MA Sudomoina, OO Favorova, G Parmigiani, ... Genetics 171 (4), 2113-2121, 2005	207	2005
Exploring massive, genome scale datasets with the GenometriCorr package A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ... PLoS computational biology 8 (5), e1002529, 2012	201	2012
Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010	188	2010
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ... Bioinformatics 21 (10), 2240-2245, 2005	164	2005
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020	155	2020
A polygenic approach to the study of polygenic diseases D Lvovs, OO Favorova, AV Favorov Acta Naturae (англоязычная версия) 4 (3 (14)), 59-71, 2012	152	2012
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014	150	2014
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ... Briefings in functional genomics 17 (1), 49-63, 2018	141	2018
A review of genome-wide association studies for multiple sclerosis: classical and hypothesis-driven approaches VV Bashinskaya, OG Kulakova, AN Boyko, AV Favorov, OO Favorova Human genetics 134, 1143-1162, 2015	133	2015
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction HS Parker, JT Leek, AV Favorov, M Considine, X Xia, S Chavan, ... Bioinformatics 30 (19), 2757-2763, 2014	122	2014
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data EJ Fertig, J Ding, AV Favorov, G Parmigiani, MF Ochs Bioinformatics 26 (21), 2792-2793, 2010	103	2010
HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers S Ren, DA Gaykalova, T Guo, AV Favorov, EJ Fertig, P Tamayo, ... Oncogene 39 (40), 6327-6339, 2020	91	2020
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers M Ando, Y Saito, G Xu, NQ Bui, K Medetgul-Ernar, M Pu, K Fisch, S Ren, ... Nature communications 10 (1), 2188, 2019	91	2019
Landscape of allele-specific transcription factor binding in the human genome S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ... Nature communications 12 (1), 2751, 2021	87	2021
Transcriptional mechanisms of resistance to anti–PD-1 therapy ML Ascierto, A Makohon-Moore, EJ Lipson, JM Taube, TL McMiller, ... Clinical cancer research 23 (12), 3168-3180, 2017	83	2017
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA LV Danilova, DD Pervouchine, AV Favorov, AA Mironov Journal of bioinformatics and computational biology 4 (02), 589-596, 2006	79	2006

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