| Amyloidogenic determinants are usually not buried KK Frousios, VA Iconomidou, CM Karletidi, SJ Hamodrakas BMC structural biology 9, 1-9, 2009 | 171 | 2009 |
| Predicting the functional consequences of non-synonymous DNA sequence variants—evaluation of bioinformatics tools and development of a consensus strategy K Frousios, CS Iliopoulos, T Schlitt, MA Simpson Genomics 102 (4), 223-228, 2013 | 136 | 2013 |
| Isolating live cell clones from barcoded populations using CRISPRa-inducible reporters C Umkehrer, F Holstein, L Formenti, J Jude, K Froussios, T Neumann, ... Nature Biotechnology 39 (2), 174-178, 2021 | 92 | 2021 |
| REAL: an efficient REad ALigner for next generation sequencing reads K Frousios, CS Iliopoulos, L Mouchard, SP Pissis, G Tischler Proceedings of the First ACM International Conference on Bioinformatics and …, 2010 | 39 | 2010 |
| Relative abundance of transcripts (RATs): identifying differential isoform abundance from RNA-seq K Froussios, K Mourão, G Simpson, G Barton, N Schurch F1000Research 8, 2019 | 28 | 2019 |
| Detection and mitigation of spurious antisense expression with RoSA K Mourão, NJ Schurch, R Lucoszek, K Froussios, K MacKinnon, C Duc, ... F1000Research 8, 819, 2019 | 15 | 2019 |
| GapMis: a tool for pairwise sequence alignment with a single gap T Flouri, K Frousios, C S. Iliopoulos, K Park, S P. Pissis, G Tischler Recent patents on DNA & gene sequences 7 (2), 84-95, 2013 | 13 | 2013 |
| Approximate string-matching with a single gap for sequence alignment T Flouri, K Park, K Frousios, SP Pissis, CS Iliopoulos, G Tischler Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011 | 11 | 2011 |
| How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana K Froussios, NJ Schurch, K Mackinnon, M Gierliński, C Duc, GG Simpson, ... Bioinformatics 35 (18), 3372-3377, 2019 | 10 | 2019 |
| Identifying differential isoform abundance with RATs: a universal tool and a warning K Froussios, K Mourão, GG Simpson, GJ Barton, NJ Schurch BioRxiv, 132761, 2017 | 9 | 2017 |
| Transcriptome map of mouse isochores S Arhondakis, K Frousios, CS Iliopoulos, SP Pissis, G Tischler, S Kossida BMC genomics 12, 1-9, 2011 | 9 | 2011 |
| How well do RNA-Seq differential gene expression tools perform in a eukaryote with a complex transcriptome? bioRxiv. 2017 K Froussios, NJ Schurch, K Mackinnon Publisher Full Text, 0 | 7 | |
| Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development AS Fedl, H Tagoh, S Gruenbacher, Q Sun, RL Schenk, K Froussios, ... Nature Immunology 25 (9), 1663-1677, 2024 | 6 | 2024 |
| HUWE1 controls tristetraprolin proteasomal degradation by regulating its phosphorylation S Scinicariello, A Soderholm, M Schäfer, A Shulkina, I Schwartz, K Hacker, ... Elife 12, e83159, 2023 | 6 | 2023 |
| How well do RNA-Seq differential gene expression tools perform in a eukaryote with a complex transcriptome? K Froussios, NJ Schurch, K Mackinnon, M Gierliński, C Duc, GG Simpson, ... bioRxiv, 090753, 2016 | 6 | 2016 |
| Transcriptome map of mouse isochores in embryonic and neonatal cortex K Frousios, CS Iliopoulos, G Tischler, S Kossida, SP Pissis, S Arhondakis Genomics 101 (2), 120-124, 2013 | 6 | 2013 |
| SPOP targets the immune transcription factor IRF1 for proteasomal degradation I Schwartz, M Vunjak, V Budroni, AC García, M Mastrovito, A Soderholm, ... Elife 12, e89951, 2023 | 3 | 2023 |
| Somatic hypermutation patterns in immunoglobulin variable regions are established independently of the local transcriptional landscape UE Schoeberl, J Fitz, K Froussios, R Valieris, I Ourailidis, M Makharova, ... | 2 | 2022 |
| SPOP targets the immune transcription factor IRF1 for proteasomal degradation M Vunjak, I Schwartz, A Cantoran García, M Mastrovito, M Hinterndorfer, ... bioRxiv, 2022.10. 10.511567, 2022 | 1 | 2022 |
| Detection and Mitigation of Spurious Antisense Reads with RoSA K Mourão, NJ Schurch, R Lucoszek, K Froussios, K MacKinnon, C Duc, ... bioRxiv, 425900, 2018 | 1 | 2018 |
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