Daria Gaykalova

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Coauteurs

Elana J FertigDirector of Institute for Genome Sciences, University of Maryland School of MedicineAdresse e-mail validée de som.umaryland.edu
Joseph CalifanoProfessor, Department of Surgery, University of California, San DiegoAdresse e-mail validée de ucsd.edu
Alexander Favorovresearch [email protected]; senior fellow [email protected]Adresse e-mail validée de sensi.org
Ludmila DanilovaSKCCC at Johns HopkinsAdresse e-mail validée de jhmi.edu
Justin A. Bishop, M.D.Professor and Chief of Anatomic Pathology, UT Southwestern Med CtrAdresse e-mail validée de UTSouthwestern.edu
Luciane Tsukamoto KagoharaJohns Hopkins UniversityAdresse e-mail validée de jhmi.edu
William WestraAdresse e-mail validée de jhmi.edu
Christine ChungMoffitt Cancer CenterAdresse e-mail validée de fastmail.net
Genevieve Stein-O'BrienAssistant Professor, Department of Neuroscience, Johns Hopkins UniversityAdresse e-mail validée de jhmi.edu
Carole FakhryAssociate Professor of Otolaryngology Head and Neck Surgery, Johns Hopkins UniversityAdresse e-mail validée de jhmi.edu
Trey IdekerUniversity of California San DiegoAdresse e-mail validée de ucsd.edu
J. Silvio Gutkind, Ph.D.UCSD, Distinguished Professor and Chair, Dept. Pharmacology, AD Basic Science Moores Cancer CenterAdresse e-mail validée de ucsd.edu
Wenyue SunLaboratory of Pathology, National Cancer InstituteAdresse e-mail validée de nih.gov
Bahman AfsariNIH/NCIAdresse e-mail validée de jhu.edu
Nishant Agrawal, MDThe University of ChicagoAdresse e-mail validée de uchicago.edu
Alex Zhavoronkov (Aleksandrs Zavoro...Insilico MedicineAdresse e-mail validée de insilico.com
Liliana FloreaAssociate Professor, Johns Hopkins School of MedicineAdresse e-mail validée de jhu.edu
Ivan V. OzerovInsilico MedicineAdresse e-mail validée de insilicomedicine.com
Alexandre MorozovProfessor of Physics, Rutgers UniversityAdresse e-mail validée de physics.rutgers.edu
Eric SiggiaRockefeller UniversityAdresse e-mail validée de cornell.edu

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Daria Gaykalova

Associate Professor of Otorhinolaryngology - Head and Neck Surgery, University of Maryland

Adresse e-mail validée de som.umaryland.edu - Page d'accueil

Cancer epigenetics chromatin transcription regulation head and neck cancer HPV


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II VA Bondarenko, LM Steele, A Újvári, DA Gaykalova, OI Kulaeva, ... Molecular cell 24 (3), 469-479, 2006	321	2006
Activation of the NOTCH Pathway in Head and Neck Cancer W Sun, DA Gaykalova, MF Ochs, E Mambo, D Arnaoutakis, Y Liu, M Loyo, ... Cancer research 74 (4), 1091-1104, 2014	276	2014
Using DNA mechanics to predict in vitro nucleosome positions and formation energies AV Morozov, K Fortney, DA Gaykalova, VM Studitsky, J Widom, ED Siggia Nucleic acids research 37 (14), 4707-4722, 2009	227	2009
Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II OI Kulaeva, DA Gaykalova, NA Pestov, VV Golovastov, DG Vassylyev, ... Nature structural & molecular biology 16 (12), 1272-1278, 2009	211	2009
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ... Briefings in functional genomics 17 (1), 49-63, 2018	141	2018
Transcription through chromatin by RNA polymerase II: histone displacement and exchange OI Kulaeva, DA Gaykalova, VM Studitsky Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 618 (1 …, 2007	125	2007
Novel insight into mutational landscape of head and neck squamous cell carcinoma DA Gaykalova, E Mambo, A Choudhary, J Houghton, K Buddavarapu, ... PloS one 9 (3), e93102, 2014	104	2014
Molecular mechanisms of human papillomavirus-related carcinogenesis in head and neck cancer F Faraji, M Zaidi, C Fakhry, DA Gaykalova Microbes and infection 19 (9-10), 464-475, 2017	94	2017
HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers S Ren, DA Gaykalova, T Guo, AV Favorov, EJ Fertig, P Tamayo, ... Oncogene 39 (40), 6327-6339, 2020	91	2020
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers M Ando, Y Saito, G Xu, NQ Bui, K Medetgul-Ernar, M Pu, K Fisch, S Ren, ... Nature communications 10 (1), 2188, 2019	89	2019
Structural analysis of nucleosomal barrier to transcription DA Gaykalova, OI Kulaeva, O Volokh, AK Shaytan, FK Hsieh, ... Proceedings of the National Academy of Sciences 112 (43), E5787-E5795, 2015	89	2015
BORIS Binding to the Promoters of Cancer Testis Antigens, MAGEA2, MAGEA3, and MAGEA4, Is Associated with Their Transcriptional Activation in Lung Cancer S Bhan, SS Negi, C Shao, CA Glazer, A Chuang, DA Gaykalova, W Sun, ... Clinical cancer research 17 (13), 4267-4276, 2011	74	2011
Preparation and analysis of uniquely positioned mononucleosomes DA Gaykalova, OI Kulaeva, VA Bondarenko, VM Studitsky Chromatin Protocols: Second Edition, 109-123, 2009	72	2009
NF‐κB and stat3 transcription factor signatures differentiate HPV‐positive and HPV‐negative head and neck squamous cell carcinoma DA Gaykalova, JB Manola, H Ozawa, V Zizkova, K Morton, JA Bishop, ... International journal of cancer 137 (8), 1879-1889, 2015	64	2015
Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks DZ Kelley, EL Flam, E Izumchenko, LV Danilova, HA Wulf, T Guo, ... Cancer research 77 (23), 6538-6550, 2017	63	2017
PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF GL Stein-O’Brien, JL Carey, WS Lee, M Considine, AV Favorov, E Flam, ... Bioinformatics 33 (12), 1892-1894, 2017	61	2017
Serum antibodies to HPV16 early proteins warrant investigation as potential biomarkers for risk stratification and recurrence of HPV-associated oropharyngeal cancer C Fakhry, JR Qualliotine, Z Zhang, N Agrawal, DA Gaykalova, JA Bishop, ... Cancer Prevention Research 9 (2), 135-141, 2016	53*	2016
Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma T Guo, DA Gaykalova, M Considine, S Wheelan, A Pallavajjala, JA Bishop, ... International journal of cancer 139 (2), 373-382, 2016	52	2016
Suprabasin is hypomethylated and associated with metastasis in salivary adenoid cystic carcinoma C Shao, M Tan, JA Bishop, J Liu, W Bai, DA Gaykalova, T Ogawa, ... PloS one 7 (11), e48582, 2012	49	2012
Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell … LT Kagohara, F Zamuner, EF Davis-Marcisak, G Sharma, M Considine, ... British journal of cancer 123 (1), 101-113, 2020	48	2020

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