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Alex Graudenzi
Alex Graudenzi
Dept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca
Adresse e-mail validée de unimib.it - Page d'accueil
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Why a simple model of genetic regulatory networks describes the distribution of avalanches in gene expression data
R Serra, M Villani, A Graudenzi, SA Kauffman
Journal of theoretical biology 246 (3), 449-460, 2007
1622007
CAPRI: efficient inference of cancer progression models from cross-sectional data
D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ...
Bioinformatics 31 (18), 3016-3026, 2015
1052015
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ...
PLoS computational biology 15 (2), e1006733, 2019
952019
Algorithmic methods to infer the evolutionary trajectories in cancer progression
G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ...
Proceedings of the National Academy of Sciences 113 (28), E4025-E4034, 2016
952016
Inferring tree causal models of cancer progression with probability raising
LO Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ...
PloS one 9 (10), e108358, 2014
762014
Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity
A Graudenzi, D Maspero, F Angaroni, R Piazza, D Ramazzotti
Iscience 24 (2), 2021
742021
Dynamical properties of a Boolean model of gene regulatory network with memory
A Graudenzi, R Serra, M Villani, C Damiani, A Colacci, SA Kauffman
Journal of Computational Biology 18 (10), 1291-1303, 2011
722011
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development
G De Matteis, A Graudenzi, M Antoniotti
Journal of mathematical biology 66 (7), 1409-1462, 2013
622013
A review of computational strategies for denoising and imputation of single-cell transcriptomic data
L Patruno, D Maspero, F Craighero, F Angaroni, M Antoniotti, A Graudenzi
Briefings in bioinformatics 22 (4), bbaa222, 2021
602021
SpidermiR: an R/bioconductor package for integrative analysis with miRNA data
C Cava, A Colaprico, G Bertoli, A Graudenzi, TC Silva, C Olsen, ...
International journal of molecular sciences 18 (2), 274, 2017
522017
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data
L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ...
Bioinformatics 32 (12), 1911-1913, 2016
482016
A stochastic model of the emergence of autocatalytic cycles
A Filisetti, A Graudenzi, R Serra, M Villani, D De Lucrezia, RM Füchslin, ...
Journal of Systems Chemistry 2, 1-10, 2011
472011
Robustness analysis of a Boolean model of gene regulatory network with memory
A Graudenzi, R Serra, M Villani, A Colacci, SA Kauffman
Journal of Computational Biology 18 (4), 559-577, 2011
462011
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data
D Ramazzotti, A Graudenzi, L De Sano, M Antoniotti, G Caravagna
BMC bioinformatics 20, 1-13, 2019
402019
Yellow nails, lymphedema and pleural effusion: treatment of chronic pleural effusion with pleuroperitoneal shunting
JD Brofman, JB Hall, W Scott, AG Little
Chest 97 (3), 743-745, 1990
391990
A stochastic model of autocatalytic reaction networks
A Filisetti, A Graudenzi, R Serra, M Villani, RM Füchslin, N Packard, ...
Theory in biosciences 131, 85-93, 2012
372012
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power
A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ...
Journal of biomedical informatics 87, 37-49, 2018
332018
The diffusion of perturbations in a model of coupled random boolean networks
R Serra, M Villani, C Damiani, A Graudenzi, A Colacci
Cellular Automata: 8th International Conference on Cellular Aotomata for …, 2008
302008
Growth and division in a dynamic protocell model
M Villani, A Filisetti, A Graudenzi, C Damiani, T Carletti, R Serra
Life 4 (4), 837-864, 2014
292014
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
D Ramazzotti, F Angaroni, D Maspero, C Gambacorti-Passerini, ...
Patterns 2 (3), 2021
282021
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