| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1306 | 2018 |
| RegPrecise 3.0–a resource for genome-scale exploration of transcriptional regulation in bacteria PS Novichkov, AE Kazakov, DA Ravcheev, SA Leyn, GY Kovaleva, ... BMC genomics 14, 1-12, 2013 | 413 | 2013 |
| The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences EV Leushkin, RA Sutormin, ER Nabieva, AA Penin, AS Kondrashov, ... BMC genomics 14, 1-11, 2013 | 86 | 2013 |
| The DOE systems biology knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... BioRxiv, 096354, 2016 | 79 | 2016 |
| Metagenome-assembled genome extraction and analysis from microbiomes using KBase D Chivian, SP Jungbluth, PS Dehal, EM Wood-Charlson, RS Canon, ... Nature Protocols 18 (1), 208-238, 2023 | 53 | 2023 |
| Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki PV Mazin, E Shagimardanova, O Kozlova, A Cherkasov, R Sutormin, ... Proceedings of the National Academy of Sciences 115 (10), E2477-E2486, 2018 | 38 | 2018 |
| Functional implications of splicing polymorphisms in the human genome YZ Kurmangaliyev, RA Sutormin, SA Naumenko, GA Bazykin, MS Gelfand Human Molecular Genetics 22 (17), 3449-3459, 2013 | 31 | 2013 |
| Comparative genome analysis of Pseudogymnoascus spp. reveals primarily clonal evolution with small genome fragments exchanged between lineages EV Leushkin, MD Logacheva, AA Penin, RA Sutormin, ES Gerasimov, ... BMC genomics 16, 1-15, 2015 | 29 | 2015 |
| Weak negative and positive selection and the drift load at splice sites SV Denisov, GA Bazykin, R Sutormin, AV Favorov, AA Mironov, ... Genome biology and evolution 6 (6), 1437-1447, 2014 | 20 | 2014 |
| BATMAS30: amino acid substitution matrix for alignment of bacterial transporters RA Sutormin, AB Rakhmaninova, MS Gelfand Proteins: Structure, Function, and Bioinformatics 51 (1), 85-95, 2003 | 19 | 2003 |
| CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation AA Nikulova, AV Favorov, RA Sutormin, VJ Makeev, AA Mironov Nucleic acids research 40 (12), e93-e93, 2012 | 16 | 2012 |
| Recognition of transmembrane segments in proteins: review and consistency-based benchmarking of internet servers NS Sadovskaya, RA Sutormin, MS Gelfand Journal of Bioinformatics and Computational Biology 4 (05), 1033-1056, 2006 | 15 | 2006 |
| The DOE systems biology knowledgebase (KBase). bioRxiv 096354 AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... | 10 | 2016 |
| Probing-directed identification of novel structured RNAs SV Vinogradova, RA Sutormin, AA Mironov, RA Soldatov RNA biology 13 (2), 232-242, 2016 | 6 | 2016 |
| Genome extraction from shotgun metagenome sequence data D Chivian, SP Jungbluth, PS Dehal, RS Canon, BH Allen, MM Clark, T Gu, ... US Department of Energy Systems Biology Knowledgebase, 2021 | 3 | 2021 |
| KBase: an integrated knowledgebase for predictive biology and environmental research A Palumbo, J Baumohl, A Best, J Bischof, B Bowen, T Brettin, T Brown, ... Proceedings of the International Conference on Bioinformatics …, 2014 | 3 | 2014 |
| Membrane probability profile construction based on amino acids sequences multiple alignment RA Sutormin, AA Mironov Molekuliarnaia Biologiia 40 (3), 541-545, 2006 | 3 | 2006 |
| The channel in transporters is formed by residues that are rare in transmembrane helices OV Kalinina, VJ Makeev, RA Sutormin, MS Gelfand, AB Rakhmaninova In Silico Biology 3 (1-2), 197-204, 2003 | 3 | 2003 |
| 596 Kazanov MD, Riehl W, Arkin AP, Dubchak I, Rodionov DA. 2013 PS Novichkov, AE Kazakov, DA Ravcheev, SA Leyn, GY Kovaleva, ... RegPrecise, 0 | 3 | |
| A DRAFT GENOME SEQUENCE OF TARTARY BUCKWHEAT, FAGOPYRUM TATARICUM MD Logacheva, RA Sutormin, SA Naumenko, NV Demidenko, ... THE EIGHTH, 187, 2012 | 2 | 2012 |
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OAdresse e-mail validée de lbl.gov
