Erik van Nimwegen

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Mihaela ZavolanProfessor of Computational Biology, Biozentrum, University of BaselAdresse e-mail validée de unibas.ch
Piotr J BalwierzPostdoctoral Researcher, Imperial College LondonAdresse e-mail validée de imperial.ac.uk
James CrutchfieldDistinguished Professor of Physics, University of California at DavisAdresse e-mail validée de ucdavis.edu
Dirk SchübelerDirector, Friedrich Miescher Institute for Biomedical Research, Basel, SwitzerlandAdresse e-mail validée de fmi.ch
Lukas BurgerResearch Associate, Friedrich Miescher Institute for Biomedical ResearchAdresse e-mail validée de fmi.ch
Robert IvanekHead of Bioinformatics at the Department of Biomedicine, University of BaselAdresse e-mail validée de unibas.ch
Olin SilanderSenior Research Fellow, Liggins Institute, University of AucklandAdresse e-mail validée de auckland.ac.nz
Andreas J. GruberUniversity of KonstanzAdresse e-mail validée de uni-konstanz.de
Eric SiggiaRockefeller UniversityAdresse e-mail validée de cornell.edu
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Adresse e-mail validée de postman.riken.jp
Nacho MolinaIGBMC - CNRS - INSERM - University of StrasbourgAdresse e-mail validée de igbmc.fr
Thomas JulouBiozentrum BaselAdresse e-mail validée de normalesup.org
Ionas ErbCentre for Genomic Regulation (CRG), BarcelonaAdresse e-mail validée de crg.eu
Martijn HuynenMBS, Radboud University Medical CentreAdresse e-mail validée de radboudumc.nl
Carsten O. DaubAssociate Professor, Karolinska InstitutetAdresse e-mail validée de ki.se
Nikolaus RajewskyProfessor, Systems Biology, Max Delbruck Center for Molecular Medicine, BerlinAdresse e-mail validée de mdc-berlin.de
Jeremie BredaEPFLAdresse e-mail validée de epfl.ch
Christian BeiselHead Genomics Facility Basel, ETH ZurichAdresse e-mail validée de bsse.ethz.ch
Jean HausserKarolinska Institutet & SciLifeLabAdresse e-mail validée de ki.se
Christoph HandschinUniversity of Basel, BiozentrumAdresse e-mail validée de unibas.ch

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Erik van Nimwegen

Professor of computational systems biology, Biozentrum, University of Basel

Adresse e-mail validée de unibas.ch - Page d'accueil

computational biology genomics systems biology transcription regulation genome evolution


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4157	2005
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014	1803	2014
DNA-binding factors shape the mouse methylome at distal regulatory regions MB Stadler, R Murr, L Burger, R Ivanek, F Lienert, A Schöler, E Nimwegen, ... Nature 480 (7378), 490-495, 2011	1536	2011
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010	870	2010
Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes E Yang, E van Nimwegen, M Zavolan, N Rajewsky, M Schroeder, ... Genome research 13 (8), 1863-1872, 2003	779	2003
Neutral evolution of mutational robustness E Van Nimwegen, JP Crutchfield, M Huynen Proceedings of the National Academy of Sciences 96 (17), 9716-9720, 1999	710	1999
Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ... Cancer cell 23 (6), 768-783, 2013	512	2013
Automated reconstruction of whole-genome phylogenies from short-sequence reads F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014	487	2014
Inference of miRNA targets using evolutionary conservation and pathway analysis D Gaidatzis, E van Nimwegen, J Hausser, M Zavolan BMC bioinformatics 8, 1-22, 2007	464	2007
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009	424	2009
Scaling laws in the functional content of genomes E van Nimwegen Trends in Genetics 19 (9), 479-484, 2003	399	2003
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny R Siddharthan, ED Siggia, E Van Nimwegen PLoS computational biology 1 (7), e67, 2005	367	2005
Adipose tissue microRNAs as regulators of CCL2 production in human obesity E Arner, N Mejhert, A Kulyté, PJ Balwierz, M Pachkov, M Cormont, ... Diabetes 61 (8), 1986-1993, 2012	346	2012
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ... Genome research 24 (5), 869-884, 2014	335	2014
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ... Nature medicine 18 (4), 529-537, 2012	314	2012
Identification of clustered microRNAs using an ab initio prediction method A Sewer, N Paul, P Landgraf, A Aravin, S Pfeffer, MJ Brownstein, T Tuschl, ... BMC bioinformatics 6, 1-15, 2005	313	2005
A probabilistic method to detect regulatory modules S Sinha, E Van Nimwegen, ED Siggia Bioinformatics-Oxford 19 (1), 292-301, 2003	279	2003
The frequency distribution of gene family sizes in complete genomes. MA Huynen, E Van Nimwegen Molecular biology and evolution 15 (5), 583-589, 1998	271	1998
Disentangling direct from indirect co-evolution of residues in protein alignments L Burger, E Van Nimwegen PLoS computational biology 6 (1), e1000633, 2010	238	2010
Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method L Burger, E Van Nimwegen Molecular systems biology 4 (1), 165, 2008	235	2008

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