Richard Bonneau

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208 articles

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Joshua A. TuckerJulius Silver, Roslyn S. Silver, and Enid Silver Winslow Professor, New York UniversityAdresse e-mail validée de nyu.edu
Jonathan NaglerProfessor of Politics, New York UniversityAdresse e-mail validée de nyu.edu
P. Douglas RenfrewSimons FoundationAdresse e-mail validée de simonsfoundation.org
Dan LittmanSkirball Institute, NYU School of MedicineAdresse e-mail validée de med.nyu.edu
Emily R MiraldiCincinnati Children's HospitalAdresse e-mail validée de cchmc.org
Vladimir GligorijevicPrescient Design, Genentech, Research & Early Development (gRED)Adresse e-mail validée de gene.com
David BakerUniversity of WashingtonAdresse e-mail validée de uw.edu
Kyunghyun ChoNew York University, GenentechAdresse e-mail validée de nyu.edu
Pablo BarberáResearch Scientist, Computational Social Science, MetaAdresse e-mail validée de meta.com
Kevin DrewAssistant Professor, University of Illinois at ChicagoAdresse e-mail validée de uic.edu
Nitin BaligaProfessorAdresse e-mail validée de systemsbiology.org
Christian L. MüllerHelmholtz Munich; Ludwig-Maximilians-Universität München; Flatiron Institute, New YorkAdresse e-mail validée de helmholtz-munich.de
Zachary D KurtzGinkgo BioworksAdresse e-mail validée de ginkgobioworks.com
Aviv MadarDirector of Data science, Valo Health, Boston, MAAdresse e-mail validée de valohealth.com
Kent KirshenbaumProfessor of Chemistry, New York UniversityAdresse e-mail validée de nyu.edu
Aaron WattersSenior Software Engineer, Flatiron InstituteAdresse e-mail validée de flatironinstitute.org
Leroy HoodInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityAdresse e-mail validée de cabm.rutgers.edu
Brian KuhlmanUniversity of North CarolinaAdresse e-mail validée de email.unc.edu
Glenn ButterfossProteinQureAdresse e-mail validée de proteinqure.com

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Richard Bonneau

Autres nomsRichard A Bonneau, Rich Bonneau

Genentech

Adresse e-mail validée de gene.com - Page d'accueil

ML-meets-structure networks biology drug discovery


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Tweeting from left to right: Is online political communication more than an echo chamber? P Barberá, JT Jost, J Nagler, JA Tucker, R Bonneau Psychological science 26 (10), 1531-1542, 2015	2338	2015
Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1876	2012
The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017	1494	2017
Sparse and compositionally robust inference of microbial ecological networks ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau PLoS computational biology 11 (5), e1004226, 2015	1456	2015
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts AG Baltz, M Munschauer, B Schwanhäusser, A Vasile, Y Murakawa, ... Molecular cell 46 (5), 674-690, 2012	1387	2012
A validated regulatory network for Th17 cell specification M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ... Cell 151 (2), 289-303, 2012	1334	2012
High-definition spatial transcriptomics for in situ tissue profiling S Vickovic, G Eraslan, F Salmén, J Klughammer, L Stenbeck, D Schapiro, ... Nature methods 16 (10), 987-990, 2019	1012	2019
Innate immune detection of the type III secretion apparatus through the NLRC4 inflammasome EA Miao, DP Mao, N Yudkovsky, R Bonneau, CG Lorang, SE Warren, ... Proceedings of the National Academy of Sciences 107 (7), 3076-3080, 2010	935	2010
Structure-based protein function prediction using graph convolutional networks V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... Nature communications 12 (1), 3168, 2021	768	2021
Ab initio protein structure prediction of CASP III targets using ROSETTA KT Simons, R Bonneau, I Ruczinski, D Baker Proteins: Structure, Function, and Bioinformatics 37 (S3), 171-176, 1999	768	1999
Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020	734	2020
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ... Genome biology 7, 1-16, 2006	685	2006
Why are there hotspot mutations in the TP53 gene in human cancers? EH Baugh, H Ke, AJ Levine, RA Bonneau, CS Chan Cell Death & Differentiation 25 (1), 154-160, 2018	640	2018
How social media facilitates political protest: Information, motivation, and social networks JT Jost, P Barberá, R Bonneau, M Langer, M Metzger, J Nagler, J Sterling, ... Political psychology 39, 85-118, 2018	637	2018
An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses T Sano, W Huang, JA Hall, Y Yang, A Chen, SJ Gavzy, JY Lee, JW Ziel, ... Cell 163 (2), 381-393, 2015	606	2015
Structural bioinformatics J Gu, PE Bourne John Wiley & Sons, 2009	554	2009
Who leads? Who follows? Measuring issue attention and agenda setting by legislators and the mass public using social media data P Barberá, A Casas, J Nagler, PJ Egan, R Bonneau, JT Jost, JA Tucker American Political Science Review 113 (4), 883-901, 2019	530	2019
c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont M Xu, M Pokrovskii, Y Ding, R Yi, C Au, OJ Harrison, C Galan, Y Belkaid, ... Nature 554 (7692), 373-377, 2018	486	2018
Ab initio protein structure prediction: progress and prospects R Bonneau, D Baker Annual review of biophysics and biomolecular structure 30 (1), 173-189, 2001	455	2001
ICOS-based chimeric antigen receptors program bipolar T_H17/T_H1 cells S Guedan, X Chen, A Madar, C Carpenito, SE McGettigan, MJ Frigault, ... Blood, The Journal of the American Society of Hematology 124 (7), 1070-1080, 2014	454	2014

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