S. Cenk Sahinalp

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Fereydoun HormozdiariAssociate Professor at University of California - DavisAdresse e-mail validée de ucdavis.edu
Evan EichlerProfessor of Genome Sciences, University of WashingtonAdresse e-mail validée de gs.washington.edu
Can AlkanBilkent University, Ankara, TurkeyAdresse e-mail validée de cs.bilkent.edu.tr
Faraz HachAssistant Professor at University of British ColumbiaAdresse e-mail validée de ubc.ca
Phuong DaoGoogleAdresse e-mail validée de google.com
Colin Collins, PhDProfessor of Urologic Sciences, University of British Columbia and Vancouver Prostate CentreAdresse e-mail validée de prostatecentre.com
Salem MalikicCancer Data Science Laboratory, National Cancer Institute, National Institutes of HealthAdresse e-mail validée de nih.gov
Andrew McPhersonAssistant Attending, Memorial Sloan Kettering Cancer CenterAdresse e-mail validée de mskcc.org
Iman HajirasoulihaAssociate Professor, Weill Cornell Medicine of Cornell University, New York CityAdresse e-mail validée de med.cornell.edu
Ibrahim NumanagićUniversity of VictoriaAdresse e-mail validée de uvic.ca
Sohrab ShahMemorial Sloan Kettering Cancer CenterAdresse e-mail validée de mskcc.org
Raheleh SalariAdresse e-mail validée de cs.stanford.edu
Funda ErgunProfessor of Computer Science, Indiana UniversityAdresse e-mail validée de iu.edu
Martin EsterDistinguished Professor of Computer Science, Simon Fraser UniversityAdresse e-mail validée de cs.sfu.ca
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgAdresse e-mail validée de informatik.uni-freiburg.de
Emre KarakocPrincipal Bioinformatician, Wellcome Sanger InstituteAdresse e-mail validée de sanger.ac.uk
Farid Rashidi MehrabadiNational Cancer Institute, NIHAdresse e-mail validée de nih.gov
Uzi VishkinProfessor, The University of Maryland Institute for Advanced Computer Studies (UMIACS) andAdresse e-mail validée de umd.edu
Kaiyuan ZhuUC San DiegoAdresse e-mail validée de ucsd.edu
Alexander WyattAssociate Professor, University of British ColumbiaAdresse e-mail validée de prostatecentre.com

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S. Cenk Sahinalp

Senior Investigator, Cancer Data Science Lab, National Cancer Institute, NIH

Adresse e-mail validée de nih.gov - Page d'accueil

Bioinformatics Computational Cancer Biology Genomics Algorithms


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
A map of human genome variation from population scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010	8975	2010
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ... Bioinformatics 26 (13), 1608-1615, 2010	2669	2010
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1995*	2020
The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020	1013	2020
Personalized copy number and segmental duplication maps using next-generation sequencing C Alkan, JM Kidd, T Marques-Bonet, G Aksay, F Antonacci, F Hormozdiari, ... Nature genetics 41 (10), 1061-1067, 2009	1001	2009
Demographic history and rare allele sharing among human populations S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ... Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011	738	2011
Genomic hallmarks of localized, non-indolent prostate cancer M Fraser, VY Sabelnykova, TN Yamaguchi, LE Heisler, J Livingstone, ... Nature 541 (7637), 359-364, 2017	646	2017
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data A McPherson, F Hormozdiari, A Zayed, R Giuliany, G Ha, MGF Sun, ... PLoS computational biology 7 (5), e1001138, 2011	629	2011
Spatial genomic heterogeneity within localized, multifocal prostate cancer PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ... Nature genetics 47 (7), 736-745, 2015	559	2015
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp Genome research 19 (7), 1270-1278, 2009	388	2009
Widespread and functional RNA circularization in localized prostate cancer S Chen, V Huang, X Xu, J Livingstone, F Soares, J Jeon, Y Zeng, JT Hua, ... Cell 176 (4), 831-843. e22, 2019	385	2019
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021	376	2021
mrsFAST: a cache-oblivious algorithm for short-read mapping F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ... Nature methods 7 (8), 576-577, 2010	350	2010
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa RD Morin, G Aksay, E Dolgosheina, HA Ebhardt, V Magrini, ER Mardis, ... Genome research 18 (4), 571-584, 2008	346	2008
Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set I Sushko, S Novotarskyi, R Körner, AK Pandey, A Cherkasov, J Li, ... Journal of chemical information and modeling 50 (12), 2094-2111, 2010	275	2010
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010	275	2010
Biomolecular network motif counting and discovery by color coding N Alon, P Dao, I Hajirasouliha, F Hormozdiari, SC Sahinalp Bioinformatics 24 (13), i241-i249, 2008	256	2008
The structure and evolution of centromeric transition regions within the human genome X She, JE Horvath, Z Jiang, G Liu, TS Furey, L Christ, R Clark, T Graves, ... Nature 430 (7002), 857-864, 2004	225	2004
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ... The Journal of pathology 227 (3), 286-297, 2012	221	2012
The proteogenomic landscape of curable prostate cancer A Sinha, V Huang, J Livingstone, J Wang, NS Fox, N Kurganovs, ... Cancer Cell 35 (3), 414-427. e6, 2019	220	2019

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