| Comprehensive integration of single-cell data T Stuart, A Butler, P Hoffman, C Hafemeister, E Papalexi, WM Mauck, ... cell 177 (7), 1888-1902. e21, 2019 | 12700 | 2019 |
| Integrated analysis of multimodal single-cell data Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ... Cell 184 (13), 3573-3587. e29, 2021 | 10156 | 2021 |
| Dictionary learning for integrative, multimodal and scalable single-cell analysis Y Hao, T Stuart, MH Kowalski, S Choudhary, P Hoffman, A Hartman, ... Nature biotechnology 42 (2), 293-304, 2024 | 1301 | 2024 |
| Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells EP Mimitou, CA Lareau, KY Chen, AL Zorzetto-Fernandes, Y Hao, ... Nature biotechnology 39 (10), 1246-1258, 2021 | 373 | 2021 |
| Periodontal pathogens are a risk factor of oral cavity squamous cell carcinoma, independent of tobacco and alcohol and human papillomavirus I Ganly, L Yang, RA Giese, Y Hao, CW Nossa, LGT Morris, M Rosenthal, ... International journal of cancer 145 (3), 775-784, 2019 | 163 | 2019 |
| A RORγt+ cell instructs gut microbiota-specific Treg cell differentiation R Kedmi, TA Najar, KR Mesa, A Grayson, L Kroehling, Y Hao, S Hao, ... Nature 610 (7933), 737-743, 2022 | 160 | 2022 |
| Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens E Papalexi, EP Mimitou, AW Butler, S Foster, B Bracken, WM Mauck III, ... Nature genetics 53 (3), 322-331, 2021 | 156 | 2021 |
| Parkinson’s disease and bacteriophages as its overlooked contributors G Tetz, SM Brown, Y Hao, V Tetz Scientific reports 8 (1), 10812, 2018 | 137 | 2018 |
| Niche-selective inhibition of pathogenic Th17 cells by targeting metabolic redundancy L Wu, KER Hollinshead, Y Hao, C Au, L Kroehling, C Ng, WY Lin, D Li, ... Cell 182 (3), 641-654. e20, 2020 | 95 | 2020 |
| C reactive protein impairs adaptive immunity in immune cells of patients with melanoma T Yoshida, J Ichikawa, I Giuroiu, AS Laino, Y Hao, M Krogsgaard, ... Journal for immunotherapy of cancer 8 (1), e000234, 2020 | 83 | 2020 |
| Type 1 Diabetes: an Association Between Autoimmunity, the Dynamics of Gut Amyloid-producing E. coli and Their Phages G Tetz, SM Brown, Y Hao, V Tetz Scientific reports 9 (1), 9685, 2019 | 82 | 2019 |
| NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health Brown University TDA Wang Siyuan (Steven) 34, ... Nature aging 2 (12), 1090-1100, 2022 | 81 | 2022 |
| Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro B Zhang, A Srivastava, E Mimitou, T Stuart, I Raimondi, Y Hao, P Smibert, ... Nature biotechnology 40 (8), 1220-1230, 2022 | 81 | 2022 |
| Efficient combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq HH Wessels, A Méndez-Mancilla, Y Hao, E Papalexi, WM Mauck III, L Lu, ... Nature methods 20 (1), 86-94, 2023 | 52 | 2023 |
| Oral and gastric microbiome in relation to gastric intestinal metaplasia F Wu, L Yang, Y Hao, B Zhou, J Hu, Y Yang, S Bedi, NG Sanichar, ... International journal of cancer 150 (6), 928-940, 2022 | 52 | 2022 |
| Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women L Yang, Y Hao, J Hu, D Kelly, H Li, S Brown, C Tasker, NE Roche, ... Emerging microbes & infections 8 (1), 197-210, 2019 | 35 | 2019 |
| The future of rapid and automated single-cell data analysis using reference mapping M Lotfollahi, Y Hao, FJ Theis, R Satija Cell 187 (10), 2343-2358, 2024 | 24 | 2024 |
| Bioinformatics in microbiome analysis Y Hao, Z Pei, SM Brown Methods in microbiology 44, 1-18, 2017 | 23 | 2017 |
| Cognitive diversity: A measurement of dissimilarity between multiple scoring systems DF Hsu, BS Kristal, Y Hao, C Schweikert Journal of Interconnection Networks 19 (01), 1940001, 2019 | 22 | 2019 |
| Multimodal single-cell datasets characterize antigen-specific CD8+ T cells across SARS-CoV-2 vaccination and infection B Zhang, R Upadhyay, Y Hao, MI Samanovic, RS Herati, JD Blair, ... Nature Immunology 24 (10), 1725-1734, 2023 | 21 | 2023 |
