| Tempo and mode of genome evolution in the budding yeast subphylum XX Shen, DA Opulente, J Kominek, X Zhou, JL Steenwyk, KV Buh, ... Cell 175 (6), 1533-1545. e20, 2018 | 515 | 2018 |
| ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas PLoS biology 18 (12), e3001007, 2020 | 364 | 2020 |
| A genome-scale phylogeny of the kingdom Fungi Y Li, JL Steenwyk, Y Chang, Y Wang, TY James, JE Stajich, JW Spatafora, ... Current Biology 31 (8), 1653-1665. e5, 2021 | 257 | 2021 |
| Biosynthetic gene clusters and the evolution of fungal chemodiversity A Rokas, ME Mead, JL Steenwyk, HA Raja, NH Oberlies Natural product reports 37 (7), 868-878, 2020 | 144 | 2020 |
| Gene essentiality analyzed by in vivo transposon mutagenesis and machine learning in a stable haploid isolate of Candida albicans ES Segal, V Gritsenko, A Levitan, B Yadav, N Dror, JL Steenwyk, ... MBio 9 (5), e02048-18, 2018 | 134 | 2018 |
| Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota XX Shen, JL Steenwyk, AL LaBella, DA Opulente, X Zhou, J Kominek, Y Li, ... Science Advances 6 (45), eabd0079, 2020 | 129 | 2020 |
| PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data JL Steenwyk, TJ Buida III, AL Labella, Y Li, XX Shen, A Rokas Bioinformatics 37 (16), 2325-2331, 2021 | 126 | 2021 |
| A robust phylogenomic time tree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium JL Steenwyk, XX Shen, AL Lind, GH Goldman, A Rokas MBio 10 (4), e00925-19, 2019 | 124 | 2019 |
| Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts JL Steenwyk, DA Opulente, J Kominek, XX Shen, X Zhou, AL Labella, ... PLoS Biology 17 (5), e3000255, 2019 | 118 | 2019 |
| Incongruence in the phylogenomics era JL Steenwyk, Y Li, X Zhou, XX Shen, A Rokas Nature Reviews Genetics 24 (12), 834-850, 2023 | 100 | 2023 |
| Variation and selection on codon usage bias across an entire subphylum AL Labella, DA Opulente, JL Steenwyk, CT Hittinger, A Rokas PLoS Genetics 15 (7), e1008304, 2019 | 100 | 2019 |
| Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains J Steenwyk, A Rokas G3: Genes, Genomes, Genetics 7 (5), 1475-1485, 2017 | 66 | 2017 |
| Variation Among Biosynthetic Gene Clusters, Secondary Metabolite Profiles, and Cards of Virulence Across Aspergillus Species JL Steenwyk, ME Mead, SL Knowles, HA Raja, CD Roberts, O Bader, ... Genetics 216 (2), 481-497, 2020 | 65 | 2020 |
| Rapid phenotypic and metabolomic domestication of wild Penicillium molds on cheese I Bodinaku, J Shaffer, A Connors, J Steenwyk, E Kastman, A Rokas, ... MBio 10 (5), e02445-19, 2019 | 62 | 2019 |
| Nutritional Heterogeneity Among Aspergillus fumigatus Strains Has Consequences for Virulence in a Strain- and Host-Dependent Manner LNA Ries, JL Steenwyk, PA de Castro, PBA de Lima, F Almeida, ... Frontiers in microbiology 10, 854, 2019 | 58 | 2019 |
| Pathogenic allodiploid hybrids of Aspergillus fungi JL Steenwyk, AL Lind, LNA Ries, TF Dos Reis, LP Silva, F Almeida, ... Current Biology 30 (13), 2495-2507. e7, 2020 | 55 | 2020 |
| Characterizing the Pathogenic, Genomic, and Chemical Traits of Aspergillus fischeri, a Close Relative of the Major Human Fungal Pathogen Aspergillus fumigatus ME Mead, SL Knowles, HA Raja, SR Beattie, CH Kowalski, JL Steenwyk, ... Msphere 4 (1), e00018-19, 2019 | 55 | 2019 |
| Copy number variation in fungi and its implications for wine yeast genetic diversity and adaptation JL Steenwyk, A Rokas Frontiers in microbiology 9, 288, 2018 | 54 | 2018 |
| Genomic and Phenotypic Heterogeneity of Clinical Isolates of the Human Pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis RAC Dos Santos, JL Steenwyk, O Rivero-Menendez, ME Mead, LP Silva, ... Frontiers in genetics 11, 459, 2020 | 50 | 2020 |
| Evolving moldy murderers: Aspergillus section Fumigati as a model for studying the repeated evolution of fungal pathogenicity A Rokas, ME Mead, JL Steenwyk, NH Oberlies, GH Goldman PLoS pathogens 16 (2), e1008315, 2020 | 48 | 2020 |
Antonis RokasCornelius Vanderbilt Chair in Biological Sciences, Vanderbilt UniversityAdresse e-mail validée de vanderbilt.edu
