Michael R. Hoopmann

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Robert MoritzProfessor, Institute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Michael MacCossProfessor of Genome Sciences, University of WashingtonAdresse e-mail validée de uw.edu
Jimmy K. EngUniversity of WashingtonAdresse e-mail validée de uw.edu
James E. BruceProfessorAdresse e-mail validée de uw.edu
Eric DeutschInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Michael RiffleUniversity of WashingtonAdresse e-mail validée de uw.edu
David ShteynbergInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Chad R. WeisbrodNational High Magnetic Field LaboratoryAdresse e-mail validée de magnet.fsu.edu
Lukas KällProfessor, Science for Life Laboratory, KTH Royal Institute of TechnologyAdresse e-mail validée de kth.se
Luis MendozaInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Mukul Kumar MidhaResearch ScientistAdresse e-mail validée de systemsbiology.org
Zhi SunInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Paul WilmesProfessorAdresse e-mail validée de uni.lu
William Stafford NobleProfessor of Genome Sciences, University of WashingtonAdresse e-mail validée de uw.edu
Magnus PalmbladLeiden University Medical CenterAdresse e-mail validée de lumc.nl
Li YangPost-doctoral Research Assistant, Department of Biochemistry, Purdue UniversityAdresse e-mail validée de purdue.edu
Frank MaixnerEurac Research - Institute for Mummy Studies, Bolzano, ItalyAdresse e-mail validée de eurac.edu
Kristian SwearingenSenior Research Scientist, Institute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Brendan MacLeanUniversity of WashingtonAdresse e-mail validée de uw.edu
Charles E. GrantUniversity of WashingtonAdresse e-mail validée de uw.edu

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Michael R. Hoopmann

Institute for Systems Biology

Adresse e-mail validée de systemsbiology.org

Proteomics Mass Spectrometry Biochemistry Computational Biology Algorithms


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Comet: An open‐source MS/MS sequence database search tool JK Eng, TA Jahan, MR Hoopmann Proteomics 13 (1), 22-24, 2013	1580	2013
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ... Cell 166 (3), 766-778, 2016	344	2016
The 5300-year-old Helicobacter pylori genome of the Iceman F Maixner, B Krause-Kyora, D Turaev, A Herbig, MR Hoopmann, ... Science 351 (6269), 162-165, 2016	296	2016
A Deeper Look into Comet—Implementation and Features JK Eng, MR Hoopmann, TA Jahan, JD Egertson, WS Noble, MJ MacCoss Journal of The American Society for Mass Spectrometry 26 (11), 1865-1874, 2015	280	2015
Kojak: efficient analysis of chemically cross-linked protein complexes MR Hoopmann, A Zelter, RS Johnson, M Riffle, MJ MacCoss, TN Davis, ... Journal of proteome research 14 (5), 2190-2198, 2015	211	2015
High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry MR Hoopmann, GL Finney, MJ MacCoss Analytical chemistry 79 (15), 5620-5632, 2007	196	2007
Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry M Bern, G Finney, MR Hoopmann, G Merrihew, MJ Toth, MJ MacCoss Analytical chemistry 82 (3), 833-841, 2010	165	2010
Crux: rapid open source protein tandem mass spectrometry analysis S McIlwain, K Tamura, A Kertesz-Farkas, CE Grant, B Diament, B Frewen, ... Journal of proteome research 13 (10), 4488-4491, 2014	162	2014
Comparison of database search strategies for high precursor mass accuracy MS/MS data EJ Hsieh, MR Hoopmann, B MacLean, MJ MacCoss Journal of proteome research 9 (2), 1138-1143, 2010	156	2010
First community-wide, comparative cross-linking mass spectrometry study C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, K Bernfur, ... Analytical chemistry 91 (11), 6953-6961, 2019	142	2019
The state of the human proteome in 2012 as viewed through PeptideAtlas T Farrah, EW Deutsch, MR Hoopmann, JL Hallows, Z Sun, CY Huang, ... Journal of proteome research 12 (1), 162-171, 2013	141	2013
Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification CR Weisbrod, JK Eng, MR Hoopmann, T Baker, JE Bruce Journal of proteome research 11 (3), 1621-1632, 2012	122	2012
PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ... Journal of proteome research 18 (12), 4262-4272, 2019	118	2019
Cross-linking measurements of in vivo protein complex topologies C Zheng, L Yang, MR Hoopmann, JK Eng, X Tang, CR Weisbrod, ... Molecular & Cellular Proteomics 10 (10), 2011	108	2011
Assessing the dynamic range and peak capacity of nanoflow LC− FAIMS− MS on an ion trap mass spectrometer for proteomics JD Canterbury, X Yi, MR Hoopmann, MJ MacCoss Analytical chemistry 80 (18), 6888-6897, 2008	107	2008
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks H Roume, A Heintz-Buschart, EEL Muller, P May, VP Satagopam, ... Npj Biofilms And Microbiomes 1, 2015	99	2015
The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching L Yang, B Vaitheesvaran, K Hartil, AJ Robinson, MR Hoopmann, JK Eng, ... Journal of proteome research 10 (9), 4134-4149, 2011	91	2011
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance M Herold, S Martínez Arbas, S Narayanasamy, AR Sheik, ... Nature communications 11 (1), 5281, 2020	84	2020
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage EEL Muller, N Pinel, CC Laczny, MR Hoopmann, S Narayanasamy, ... Nature communications 5 (1), 5603, 2014	84	2014
Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution μLC-MS data GL Finney, AR Blackler, MR Hoopmann, JD Canterbury, CC Wu, ... Analytical chemistry 80 (4), 961-971, 2008	82	2008

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