| Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities LO Huang, A Rauch, E Mazzaferro, M Preuss, S Carobbio, CS Bayrak, ... Nature Metabolism 3 (2), 228-243, 2021 | 97 | 2021 |
| De novo variants in exomes of congenital heart disease patients identify risk genes and pathways C Sevim Bayrak, P Zhang, M Tristani-Firouzi, BD Gelb, Y Itan Genome medicine 12, 1-18, 2020 | 63 | 2020 |
| RAG-3D: a search tool for RNA 3D substructures M Zahran, C Sevim Bayrak, S Elmetwaly, T Schlick Nucleic acids research 43 (19), 9474-9488, 2015 | 44 | 2015 |
| Identification of discriminative gene-level and protein-level features associated with pathogenic gain-of-function and loss-of-function variants CS Bayrak, D Stein, A Jain, K Chaudhary, GN Nadkarni, TT Van Vleck, ... The American Journal of Human Genetics 108 (12), 2301-2318, 2021 | 36 | 2021 |
| Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction CS Bayrak, N Kim, T Schlick Nucleic acids research 45 (9), 5414-5422, 2017 | 24 | 2017 |
| Genome-wide prediction of pathogenic gain-and loss-of-function variants from ensemble learning of a diverse feature set D Stein, ME Kars, Y Wu, ÇS Bayrak, PD Stenson, DN Cooper, ... Genome Medicine 15 (1), 103, 2023 | 19 | 2023 |
| Identifying disease-causing mutations in genomes of single patients by computational approaches C Sevim Bayrak, Y Itan Human Genetics 139 (6), 769-776, 2020 | 14 | 2020 |
| Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients Y Wu, K Gettler, ME Kars, M Giri, D Li, CS Bayrak, P Zhang, A Jain, ... Nature communications 14 (1), 2256, 2023 | 13 | 2023 |
| Dual graph partitioning highlights a small group of pseudoknot-containing RNA submotifs S Jain, CS Bayrak, L Petingi, T Schlick Genes 9 (8), 371, 2018 | 13 | 2018 |
| A computational approach for detecting physiological homogeneity in the midst of genetic heterogeneity P Zhang, A Cobat, YS Lee, Y Wu, CS Bayrak, C Boccon-Gibod, ... The American Journal of Human Genetics 108 (6), 1012-1025, 2021 | 10 | 2021 |
| Chemokine receptor 5 signaling in PFC mediates stress susceptibility in female mice HY Lin, F Cathomas, L Li, RD Cuttoli, C Guevara, CS Bayrak, Q Wang, ... bioRxiv, 2023.08. 18.553789, 2023 | 4 | 2023 |
| Identifying shared genetic factors underlying epilepsy and congenital heart disease in Europeans Y Wu, CS Bayrak, B Dong, S He, PD Stenson, DN Cooper, Y Itan, L Chen Human Genetics 142 (2), 275-288, 2023 | 3 | 2023 |
| Conformational transitions in the Ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model CS Bayrak, B Erman Molecular BioSystems 10 (3), 663-671, 2014 | 3 | 2014 |
| Predicting most probable conformations of a given peptide sequence in the random coil state CS Bayrak, B Erman Molecular BioSystems 8 (11), 3010-3016, 2012 | 3 | 2012 |
| Identifying novel high-impact rare disease-causing mutations, genes and pathways in exomes of Ashkenazi Jewish inflammatory bowel disease patients Y Wu, K Gettler, M Giri, D Li, CS Bayrak, A Jain, P Maffucci, K Sabic, ... medRxiv, 2020.07. 01.20143750, 2020 | 2 | 2020 |
| Patient Subtyping Analysis of Baseline Multi-omic Data Reveals Distinct Pre-immune States Predictive of Vaccination Responses CS Bayrak, C Forst, DR Jones, D Gresham, S Pushalkar, S Wu, C Vogel, ... Biorxiv: the Preprint Server for Biology, 2024 | 1 | 2024 |
| Identification of Discriminative Gene-level and Protein-level Features Associated with Gain-of-Function and Loss-of-Function Mutations CS Bayrak, A Jain, D Stein, K Chaudhary, GN Nadkarni, T Van Vleck, ... bioRxiv, 2021.01. 01.424981, 2021 | 1 | 2021 |
| A comprehensive knowledgebase of known and predicted human genetic variants associated with COVID-19 susceptibility and severity ME Kars, D Stein, CS Bayrak, P Stenson, D Cooper, Y Itan Clinical Immunology (Orlando, Fla.) 250, 109526, 2023 | | 2023 |
| Genome-wide prediction of pathogenic gain-and loss-of-function variants from ensemble learning of a diverse feature set D Stein, Ç Sevim Bayrak, Y Wu, ME Kars, PD Stenson, DN Cooper, ... bioRxiv, 2022.06. 08.495288, 2022 | | 2022 |
| New machine learning approaches to estimate the functional consequence of mutations in diverse human populations Y Itan, Y Wu, CS Bayrak JOURNAL OF CLINICAL IMMUNOLOGY 41 (SUPPL 1), S135-S135, 2021 | | 2021 |