Alexey Nesvizhskii

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198 articles

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Aebersold RETH ZurichAdresse e-mail validée de imsb.biol.ethz.ch
Hyungwon ChoiAdresse e-mail validée de nus.edu.sg
Felipe da Veiga LeprevostPrincipal Scientist, GenentechAdresse e-mail validée de gene.com
Fengchao YuResearch Investigator, University of MichiganAdresse e-mail validée de umich.edu
anne-claude gingrasLunenfeld-Tanenbaum Research Institute; University of TorontoAdresse e-mail validée de lunenfeld.ca
Dattatreya MellacheruvuBristol Myers SquibbAdresse e-mail validée de umich.edu
venkatesha basrurAssociate Research Scientist, University of MichiganAdresse e-mail validée de med.umich.edu
Jimmy K. EngUniversity of WashingtonAdresse e-mail validée de uw.edu
Guo Ci TeoUniversity of MichiganAdresse e-mail validée de umich.edu
Dmitry AvtonomovBertis BioScienceAdresse e-mail validée de dmtavt.com
Arul ChinnaiyanAdresse e-mail validée de umich.edu
Chih-Chiang TsouScorpion Therapeutics, Immatics US Inc, University of Michigan, Academia SinicaAdresse e-mail validée de umich.edu
Eric DeutschInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Daniel A. PolaskyResearch Investigator, Department of Pathology, University of MichiganAdresse e-mail validée de umich.edu
Eugene KolkerProfessor, Tandon School of Engineering & School of Global Public Health, New York UniversityAdresse e-mail validée de nyu.edu
David ShteynbergInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Arun SreekumarCharles C Bell Endowed ProfessorAdresse e-mail validée de bcm.edu
Sarah E HaynesEnveda BiosciencesAdresse e-mail validée de envedabio.com
Mike TyersThe Hospital for Sick ChildrenAdresse e-mail validée de sickkids.ca
Olga VitekProfessor, Khoury College of Computer Sciences, Northeastern UniversityAdresse e-mail validée de neu.edu

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Alexey Nesvizhskii

Godfrey D. Stobbe Professor of Bioinformatics @ University of Michigan

Adresse e-mail validée de umich.edu - Page d'accueil

Bioinformatics Proteomics Computational Biology Mass Spectrometry Proteogenomics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search A Keller, AI Nesvizhskii, E Kolker, R Aebersold Analytical chemistry 74 (20), 5383-5392, 2002	5715	2002
A statistical model for identifying proteins by tandem mass spectrometry AI Nesvizhskii, A Keller, E Kolker, R Aebersold Analytical chemistry 75 (17), 4646-4658, 2003	5455	2003
The CRAPome: a contaminant repository for affinity purification–mass spectrometry data D Mellacheruvu, Z Wright, AL Couzens, JP Lambert, NA St-Denis, T Li, ... Nature methods 10 (8), 730–736, 2013	1840	2013
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics AT Kong, FV Leprevost, DM Avtonomov, D Mellacheruvu, AI Nesvizhskii Nature methods 14 (5), 513-520, 2017	1664	2017
The landscape of circular RNA in cancer JN Vo, M Cieslik, Y Zhang, S Shukla, L Xiao, Y Zhang, YM Wu, ... Cell 176 (4), 869-881. e13, 2019	1387	2019
Interpretation of shotgun proteomic data: the protein inference problem AI Nesvizhskii, R Aebersold Molecular & cellular proteomics 4 (10), 1419-1440, 2005	1269	2005
The peptideatlas project F Desiere, EW Deutsch, NL King, AI Nesvizhskii, P Mallick, J Eng, S Chen, ... Nucleic acids research 34 (suppl_1), D655-D658, 2006	987	2006
SAINT: probabilistic scoring of affinity purification–mass spectrometry data H Choi, B Larsen, ZY Lin, A Breitkreutz, D Mellacheruvu, D Fermin, ZS Qin, ... Nature methods 8 (1), 70-73, 2011	862	2011
A guided tour of the Trans‐Proteomic Pipeline EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ... Proteomics 10 (6), 1150-1159, 2010	861	2010
Analysis and validation of proteomic data generated by tandem mass spectrometry AI Nesvizhskii, O Vitek, R Aebersold Nature methods 4 (10), 787-797, 2007	848	2007
Proteogenomics: concepts, applications and computational strategies AI Nesvizhskii Nature methods 11 (11), 1114-1125, 2014	818	2014
A global protein kinase and phosphatase interaction network in yeast A Breitkreutz, H Choi, JR Sharom, L Boucher, V Neduva, B Larsen, ZY Lin, ... Science 328 (5981), 1043, 2010	799	2010
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics CC Tsou, D Avtonomov, B Larsen, M Tucholska, H Choi, AC Gingras, ... Nature methods 12 (3), 258-264, 2015	698	2015
An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency L Ho, JL Ronan, J Wu, BT Staahl, L Chen, A Kuo, J Lessard, ... Proceedings of the National Academy of Sciences 106 (13), 5181-5186, 2009	680	2009
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics AI Nesvizhskii Journal of proteomics 73 (11), 2092-2123, 2010	663	2010
SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software G Teo, G Liu, J Zhang, AI Nesvizhskii, AC Gingras, H Choi Journal of proteomics 100, 37-43, 2014	658	2014
iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ... Molecular & cellular proteomics 10 (12), 2011	628	2011
BioContainers: an open-source and community-driven framework for software standardization F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ... Bioinformatics 33 (16), 2580-2582, 2017	598	2017
The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data S Carr, R Aebersold, M Baldwin, AL Burlingame, K Clauser, A Nesvizhskii Molecular & Cellular Proteomics 3 (6), 531-533, 2004	589	2004
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020	584	2020

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