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Yuxing Liao
Yuxing Liao
Adresse e-mail validée de bcm.edu
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WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
Y Liao, J Wang, EJ Jaehnig, Z Shi, B Zhang
Nucleic acids research 47 (W1), W199-W205, 2019
28832019
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
5822020
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer Cell 39 (4), 509-528. e20, 2021
5022021
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456. e31, 2020
4042020
ECOD: an evolutionary classification of protein domains
H Cheng, RD Schaeffer, Y Liao, LN Kinch, J Pei, S Shi, BH Kim, ...
PLoS computational biology 10 (12), e1003926, 2014
3842014
Proteogenomic Characterization of Endometrial Carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
3832020
Proteogenomic characterization of pancreatic ductal adenocarcinoma
L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ...
Cell 184 (19), 5031-5052. e26, 2021
3782021
The WAVE regulatory complex links diverse receptors to the actin cytoskeleton
B Chen, K Brinkmann, Z Chen, CW Pak, Y Liao, S Shi, L Henry, ...
Cell 156 (1), 195-207, 2014
3102014
Large-scale determination of previously unsolved protein structures using evolutionary information
S Ovchinnikov, L Kinch, H Park, Y Liao, J Pei, DE Kim, H Kamisetty, ...
Elife 4, e09248, 2015
2822015
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ...
Cancer cell 39 (3), 361-379. e16, 2021
2722021
A proteogenomic portrait of lung squamous cell carcinoma
S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ...
Cell 184 (16), 4348-4371. e40, 2021
2642021
Deep learning in proteomics
B Wen, WF Zeng, Y Liao, Z Shi, SR Savage, W Jiang, B Zhang
Proteomics 20 (21-22), 1900335, 2020
1572020
CASP9 assessment of free modeling target predictions
L Kinch, S Yong Shi, Q Cong, H Cheng, Y Liao, NV Grishin
Proteins: Structure, Function, and Bioinformatics 79 (S10), 59-73, 2011
1222011
ECOD: new developments in the evolutionary classification of domains
RD Schaeffer, Y Liao, H Cheng, NV Grishin
Nucleic acids research 45 (D1), D296-D302, 2017
902017
Proteogenomic data and resources for pan-cancer analysis
Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ...
Cancer cell 41 (8), 1397-1406, 2023
782023
Manual classification strategies in the ECOD database
H Cheng, Y Liao, RD Schaeffer, NV Grishin
Proteins: Structure, Function, and Bioinformatics 83 (7), 1238-1251, 2015
782015
Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
Y Geffen, S Anand, Y Akiyama, TM Yaron, Y Song, JL Johnson, ...
Cell 186 (18), 3945-3967. e26, 2023
662023
Pan-cancer proteogenomics connects oncogenic drivers to functional states
Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron, V Stathias, ...
Cell 186 (18), 3921-3944. e25, 2023
502023
WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics
JM Elizarraras, Y Liao, Z Shi, Q Zhu, AR Pico, B Zhang
Nucleic Acids Research, gkae456, 2024
442024
Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin
WW Liang, RJH Lu, RG Jayasinghe, SM Foltz, E Porta-Pardo, Y Geffen, ...
Cancer Cell 41 (9), 1567-1585. e7, 2023
382023
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