| Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics AW Purcell, SH Ramarathinam, N Ternette Nature protocols 14 (6), 1687-1707, 2019 | 323 | 2019 |
| Discovery of an archetypal protein transport system in bacterial outer membranes J Selkrig, K Mosbahi, CT Webb, MJ Belousoff, AJ Perry, TJ Wells, F Morris, ... Nature structural & molecular biology 19 (5), 506-510, 2012 | 252 | 2012 |
| Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells JD Ooi, J Petersen, YH Tan, M Huynh, ZJ Willett, SH Ramarathinam, ... Nature 545 (7653), 243-247, 2017 | 221 | 2017 |
| A subset of HLA-I peptides are not genomically templated: Evidence for cis-and trans-spliced peptide ligands P Faridi, C Li, SH Ramarathinam, JP Vivian, PT Illing, NA Mifsud, R Ayala, ... Science immunology 3 (28), eaar3947, 2018 | 163 | 2018 |
| An open-source computational and data resource to analyze digital maps of immunopeptidomes E Caron, L Espona, DJ Kowalewski, H Schuster, N Ternette, A Alpízar, ... Elife 4, e07661, 2015 | 132 | 2015 |
| A class of γδ T cell receptors recognize the underside of the antigen-presenting molecule MR1 J Le Nours, NA Gherardin, SH Ramarathinam, W Awad, F Wiede, ... Science 366 (6472), 1522-1527, 2019 | 128 | 2019 |
| The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis YT Ting, J Petersen, SH Ramarathinam, SW Scally, KL Loh, R Thomas, ... Journal of Biological Chemistry 293 (9), 3236-3251, 2018 | 114 | 2018 |
| MHC-I peptides get out of the groove and enable a novel mechanism of HIV-1 escape P Pymm, PT Illing, SH Ramarathinam, GM O'Connor, VA Hughes, ... Nature structural & molecular biology 24 (4), 387-394, 2017 | 104 | 2017 |
| A modular BAM complex in the outer membrane of the α-proteobacterium Caulobacter crescentus K Anwari, S Poggio, A Perry, X Gatsos, SH Ramarathinam, NA Williamson, ... PloS one 5 (1), e8619, 2010 | 82 | 2010 |
| Phosphorylated self-peptides alter human leukocyte antigen class I-restricted antigen presentation and generate tumor-specific epitopes J Petersen, SJ Wurzbacher, NA Williamson, SH Ramarathinam, HH Reid, ... Proceedings of the National Academy of Sciences 106 (8), 2776-2781, 2009 | 82 | 2009 |
| Spliced peptides and cytokine-driven changes in the immunopeptidome of melanoma P Faridi, K Woods, S Ostrouska, C Deceneux, R Aranha, D Duscharla, ... Cancer immunology research 8 (10), 1322-1334, 2020 | 55 | 2020 |
| A comprehensive analysis of constitutive naturally processed and presented HLA‐C*04:01 (Cw4) – specific peptides RB Schittenhelm, NL Dudek, NP Croft, SH Ramarathinam, AW Purcell Tissue antigens 83 (3), 174-179, 2014 | 51 | 2014 |
| Secreted HLA recapitulates the immunopeptidome and allows in-depth coverage of HLA A* 02: 01 ligands KE Scull, NL Dudek, AJ Corbett, SH Ramarathinam, DG Gorasia, ... Molecular immunology 51 (2), 136-142, 2012 | 51 | 2012 |
| Improved peptide-MHC class II interaction prediction through integration of eluted ligand and peptide affinity data C Garde, SH Ramarathinam, EC Jappe, M Nielsen, JV Kringelum, T Trolle, ... Immunogenetics 71, 445-454, 2019 | 41 | 2019 |
| Immunopeptidomic analysis reveals that deamidated HLA-bound peptides arise predominantly from deglycosylated precursors S Mei, R Ayala, SH Ramarathinam, PT Illing, P Faridi, J Song, AW Purcell, ... Molecular & Cellular Proteomics 19 (7), 1236-1247, 2020 | 39 | 2020 |
| A systems approach to understand antigen presentation and the immune response NL Dudek, NP Croft, RB Schittenhelm, SH Ramarathinam, AW Purcell Proteomics in Systems Biology: Methods and Protocols, 189-209, 2016 | 36 | 2016 |
| Identification of native and posttranslationally modified HLA‐B* 57: 01‐restricted HIV envelope derived epitopes using immunoproteomics SH Ramarathinam, S Gras, S Alcantara, AWS Yeung, NA Mifsud, S Sonza, ... Proteomics 18 (12), 1700253, 2018 | 31 | 2018 |
| Employing proteomics in the study of antigen presentation: an update SH Ramarathinam, NP Croft, PT Illing, P Faridi, AW Purcell Expert Review of Proteomics 15 (8), 637-645, 2018 | 28 | 2018 |
| Rapid microscale in-gel processing and digestion of proteins using surface acoustic waves KP Kulkarni, SH Ramarathinam, J Friend, L Yeo, AW Purcell, P Perlmutter Lab on a Chip 10 (12), 1518-1520, 2010 | 28 | 2010 |
| Structural and biological basis of CTL escape in coronavirus-infected mice NS Butler, A Theodossis, AI Webb, MA Dunstone, R Nastovska, ... The Journal of Immunology 180 (6), 3926-3937, 2008 | 25 | 2008 |
