| The future landscape of large language models in medicine J Clusmann, FR Kolbinger, HS Muti, ZI Carrero, JN Eckardt, NG Laleh, ... Communications medicine 3 (1), 141, 2023 | 485 | 2023 |
| Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study SJ Wagner, D Reisenbüchler, NP West, JM Niehues, J Zhu, S Foersch, ... Cancer Cell 41 (9), 1650-1661. e4, 2023 | 128 | 2023 |
| Structure-preserving multi-domain stain color augmentation using style-transfer with disentangled representations SJ Wagner, N Khalili, R Sharma, M Boxberg, C Marr, W De Back, T Peng Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th …, 2021 | 52 | 2021 |
| Local attention graph-based transformer for multi-target genetic alteration prediction D Reisenbüchler, SJ Wagner, M Boxberg, T Peng International Conference on Medical Image Computing and Computer-Assisted …, 2022 | 29 | 2022 |
| Make deep learning algorithms in computational pathology more reproducible and reusable SJ Wagner, C Matek, S Shetab Boushehri, M Boxberg, L Lamm, A Sadafi, ... Nature Medicine 28 (9), 1744-1746, 2022 | 20 | 2022 |
| Hest-1k: A dataset for spatial transcriptomics and histology image analysis G Jaume, P Doucet, A Song, MY Lu, C Almagro Pérez, S Wagner, ... Advances in Neural Information Processing Systems 37, 53798-53833, 2025 | 16 | 2025 |
| S5cl: unifying fully-supervised, self-supervised, and semi-supervised learning through hierarchical contrastive learning M Tran, SJ Wagner, M Boxberg, T Peng International Conference on Medical Image Computing and Computer-Assisted …, 2022 | 16 | 2022 |
| From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology OSM El Nahhas, M van Treeck, G Wölflein, M Unger, M Ligero, T Lenz, ... Nature Protocols 20 (1), 293-316, 2025 | 15 | 2025 |
| Built to last? Reproducibility and reusability of deep learning algorithms in computational pathology SJ Wagner, C Matek, SS Boushehri, M Boxberg, L Lamm, A Sadafi, ... Modern Pathology 37 (1), 100350, 2024 | 13 | 2024 |
| Low-resource finetuning of foundation models beats state-of-the-art in histopathology B Roth, V Koch, SJ Wagner, JA Schnabel, C Marr, T Peng 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 1-5, 2024 | 11 | 2024 |
| Multimodal whole slide foundation model for pathology T Ding, SJ Wagner, AH Song, RJ Chen, MY Lu, A Zhang, AJ Vaidya, ... arXiv preprint arXiv:2411.19666, 2024 | 8 | 2024 |
| Multi-modality microscopy image style augmentation for nuclei segmentation Y Liu, SJ Wagner, T Peng Journal of Imaging 8 (3), 71, 2022 | 8 | 2022 |
| Generating highly accurate pathology reports from gigapixel whole slide images with HistoGPT M Tran, P Schmidle, SJ Wagner, V Koch, V Lupperger, A Feuchtinger, ... medRxiv, 2024.03. 15.24304211, 2024 | 6 | 2024 |
| Approaching Peak Ground Truth F Kofler, J Wahle, I Ezhov, SJ Wagner, R Al-Maskari, E Gryska, M Todorov, ... arXiv preprint arXiv:2301.00243, 2022 | 5 | 2022 |
| DinoBloom: a foundation model for generalizable cell embeddings in hematology V Koch, SJ Wagner, S Kazeminia, E Sancar, M Hehr, JA Schnabel, ... International Conference on Medical Image Computing and Computer-Assisted …, 2024 | 3 | 2024 |
| B-Cos Aligned Transformers Learn Human-Interpretable Features M Tran, A Lahiani, Y Dicente Cid, M Boxberg, P Lienemann, C Matek, ... International Conference on Medical Image Computing and Computer-Assisted …, 2023 | 3 | 2023 |
| Molecular-driven Foundation Model for Oncologic Pathology A Vaidya, A Zhang, G Jaume, AH Song, T Ding, SJ Wagner, MY Lu, ... arXiv preprint arXiv:2501.16652, 2025 | 2 | 2025 |
| Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance JM Niehues, G Müller-Franzes, Y Schirris, SJ Wagner, M Jendrusch, ... Computers in Biology and Medicine 175, 108410, 2024 | 2 | 2024 |
| Curvature bounds on length-minimizing discs A Lytchak, S Wagner Geometriae Dedicata 218 (2), 49, 2024 | 2 | 2024 |
| ATF6 activation alters colonic lipid metabolism causing tumor-associated microbial adaptation OI Coleman, A Sorbie, S Bierwith, J Kövilein, M von Stern, N Köhler, ... bioRxiv, 2023.11. 03.565267, 2023 | 1 | 2023 |
Tingying PengGroupleader at Helmholtz AI, Helmholtz Zentrum MuechenAdresse e-mail validée de tum.de