| Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome eLife, 2016 | 153 | 2016 |
| A Helitron transposon reconstructed from bats reveals a novel mechanism of genome shuffling in eukaryotes I Grabundzija, SA Messing, J Thomas, RL Cosby, I Bilic, C Miskey, ... Nature Communications 7 (10716), 2016 | 136 | 2016 |
| Genome sequencing of the phytoseiid predatory mite Metaseiulus occidentalis reveals completely atomised Hox genes and super-dynamic intron evolution MA Hoy, RM Waterhouse, K Wu, AS Estep, P Ioannidis, WJ Palmer, ... Genome Biology and Evolution doi:10.1093/gbe/evw048, 2016 | 128 | 2016 |
| Helitrons, the Eukaryotic Rolling-circle Transposable Elements J Thomas, EJ Pritham MicrobiologySpectrum,MobileDNA3 3 (1), 893-926, 2015 | 125 | 2015 |
| Pervasive horizontal transfer of rolling-circle transposons among animals J Thomas, S Schaack, EJ Pritham Genome Biology and Evolution 2, 656-664, 2010 | 123 | 2010 |
| Pedigree-based estimation of human mobile element retrotransposition rates J Feusier, WS Watkins, J Thomas, A Farrell, DJ Witherspoon, L Baird, ... Genome Research 29 (10), 1567-1577, 2019 | 106 | 2019 |
| Variation in proviral content among human genomes mediated by LTR recombination J Thomas, H Perron, C Feschotte Mobile DNA 9 (36), 2018 | 84 | 2018 |
| Rolling-circle transposons catalyze genomic innovation in a mammalian lineage J Thomas, CD Phillips, RJ Baker, EJ Pritham Genome biology and evolution 6 (10), 2595-2610, 2014 | 69 | 2014 |
| Genome streamlining in a minute herbivore that manipulates its host plant R Greenhalgh, W Dermauw, JJ Glas, S Rombauts, N Wybouw, J Thomas, ... Elife 9, e56689, 2020 | 51 | 2020 |
| DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons) J Thomas, K Vadnagara, EJ Pritham Mobile DNA 5, 1-13, 2014 | 40 | 2014 |
| The limited distribution of Helitrons to vesper bats supports horizontal transfer J Thomas, M Sorourian, D Ray, RJ Baker, EJ Pritham Gene 474 (1-2), 52-58, 2011 | 34 | 2011 |
| The Simons Genome Diversity Project: a global analysis of mobile element diversity WS Watkins, JE Feusier, J Thomas, C Goubert, S Mallick, LB Jorde Genome biology and evolution 12 (6), 779-794, 2020 | 28 | 2020 |
| TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data C Goubert, J Thomas, LM Payer, JM Kidd, J Feusier, WS Watkins, ... Nucleic Acid Research, 2020 | 17 | 2020 |
| Helitrons, the Eukaryotic Rolling-Circle Transposable Elements in Mobile DNA III J Thomas, EJ Pritham ASM Press: Washington, DC, USA, 2015 | 10 | 2015 |
| Diverse endogenous retroviruses generate structural variation between human genomes via LTR recombination J Thomas, H Perron, C Feschotte bioRxiv, 382630, 2018 | 3 | 2018 |
| Transposable Element Structural Variants in Parkinson’s Disease: Focusing on Genotyping Alu Transposable Element Insertions with TypeTE K Billingsley, J Thomas, C Goubert Genomic Structural Variants in Nervous System Disorders, 43-62, 2022 | 2 | 2022 |
| A pedigree-based estimate of the human germline retrotransposition rate JE Feusier, W Watkins, J Thomas, L Baird, M Leppert, LB Jorde EUROPEAN JOURNAL OF HUMAN GENETICS 27, 834-834, 2019 | | 2019 |