Jonathan Cooper

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David GavaghanProfessor of Computational Biology, University of OxfordAdresse e-mail validée de cs.ox.ac.uk
Gary MiramsCentre for Mathematical Medicine & Biology, University of NottinghamAdresse e-mail validée de nottingham.ac.uk
Joe Pitt-FrancisUniversity of Oxford, Department of Computer ScienceAdresse e-mail validée de cs.ox.ac.uk
Miguel O. BernabeuProfessor of Computational Medicine, The University of EdinburghAdresse e-mail validée de ed.ac.uk
Pras PathmanathanFood and Drug AdministrationAdresse e-mail validée de fda.hhs.gov
Alan GarnyAuckland Bioengineering Institute, University of AucklandAdresse e-mail validée de auckland.ac.nz
James OsborneUniversity of MelbourneAdresse e-mail validée de unimelb.edu.au
Alexander G FletcherUniversity of SheffieldAdresse e-mail validée de sheffield.ac.uk
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandAdresse e-mail validée de auckland.ac.nz
Rafel BordasFirst Light Fusion LtdAdresse e-mail validée de firstlightfusion.com
Philip MainiProfessor of Mathematical BiologyAdresse e-mail validée de maths.ox.ac.uk
Dagmar WaltemathProfessor of Medical InformaticsAdresse e-mail validée de uni-greifswald.de
Steve McKeeverAssociate Professor, Uppsala UniversityAdresse e-mail validée de im.uu.se
Helen ByrneUniversity of OxfordAdresse e-mail validée de maths.ox.ac.uk
Blanca RodriguezUniversity of OxfordAdresse e-mail validée de cs.ox.ac.uk
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyAdresse e-mail validée de caltech.edu
James SouthernSGIAdresse e-mail validée de sgi.com
Poul NielsenProfessor, Engineering Science and Auckland Bioengineering Institute, University of AucklandAdresse e-mail validée de auckland.ac.nz
Michael HuckaGoogle Quantum AIAdresse e-mail validée de google.com
Denis NobleEmeritus Professor of Cardiovascular Physiology, Oxford UniversityAdresse e-mail validée de dpag.ox.ac.uk

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Jonathan Cooper

University College London

Adresse e-mail validée de ucl.ac.uk - Page d'accueil

Research Software Engineering Computational Biology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Chaste: An Open Source C++ Library for Computational Physiology and Biology GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ... PLoS Computational Biology 9 (3), 2013	519	2013
Simulation of multiple ion channel block provides improved early prediction of compounds’ clinical torsadogenic risk GR Mirams, Y Cui, A Sher, M Fink, J Cooper, BM Heath, NC McMahon, ... Cardiovascular research 91 (1), 53-61, 2011	347	2011
Chaste: a test-driven approach to software development for biological modelling J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, ... Computer Physics Communications 180 (12), 2452-2471, 2009	311	2009
An integrative computational model for intestinal tissue renewal IMM Van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, ... Cell proliferation 42 (5), 617-636, 2009	190	2009
CellML and associated tools and techniques A Garny, DP Nickerson, J Cooper, RW Santos, AK Miller, S McKeever, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008	177	2008
Minimum Information About a Simulation Experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS Computational Biology 7 (4), e1001122, 2011	174	2011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 369, 2014	167	2014
A computational study of discrete mechanical tissue models P Pathmanathan, J Cooper, A Fletcher, G Mirams, P Murray, J Osborne, ... Physical biology 6, 036001, 2009	148	2009
Computational assessment of drug‐induced effects on the electrocardiogram: from ion channel to body surface potentials N Zemzemi, MO Bernabeu, J Saiz, J Cooper, P Pathmanathan, ... British Journal of Pharmacology 168 (3), 718-733, 2013	132	2013
Chaste: using agile programming techniques to develop computational biology software J Pitt-Francis, MO Bernabeu, J Cooper, A Garny, L Momtahan, J Osborne, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008	107	2008
A numerical guide to the solution of the bidomain equations of cardiac electrophysiology P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, A Garny, ... Progress in biophysics and molecular biology 102 (2-3), 136-155, 2010	103	2010
An overview of the CellML API and its implementation A Miller, J Marsh, A Reeve, A Garny, R Britten, M Halstead, J Cooper, ... BMC bioinformatics 11 (1), 178, 2010	96	2010
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in Bioengineering and Biotechnology 3, 2015	95	2015
Chaste: Cancer, Heart and Soft Tissue Environment F Cooper, R Baker, M Bernabeu, R Bordas, L Bowler, A Bueno-Orovio, ... Journal of Open Source Software 5 (47), 1848, 2020	78	2020
Ten simple rules for a successful cross-disciplinary collaboration B Knapp, R Bardenet, MO Bernabeu, R Bordas, M Bruna, B Calderhead, ... PLoS computational biology 11 (4), e1004214, 2015	74	2015
The Cardiac Electrophysiology Web Lab J Cooper, M Scharm, GR Mirams Biophysical Journal 110 (2), 292-300, 2016	70	2016
High-throughput functional curation of cellular electrophysiology models J Cooper, GR Mirams, SA Niederer Progress in biophysics and molecular biology 107 (1), 11-20, 2011	65	2011
A call for virtual experiments: accelerating the scientific process J Cooper, JO Vik, D Waltemath Progress in biophysics and molecular biology 117 (1), 99-106, 2015	61	2015
Ten simple rules for effective computational research JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ... PLoS Comput Biol 10 (3), e1003506, 2014	61	2014
Chaste: incorporating a novel multi-scale spatial and temporal algorithm into a large-scale open source library MO Bernabeu, R Bordas, P Pathmanathan, J Pitt-Francis, J Cooper, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009	48	2009

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