Dagmar Waltemath

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David Phillip NickersonAuckland Bioengineering Institute, University of AucklandAdresse e-mail validée de auckland.ac.nz
Michael HuckaGoogle Quantum AIAdresse e-mail validée de google.com
Martin GolebiewskiHITS gGmbH, Heidelberg (Germany)Adresse e-mail validée de h-its.org
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyAdresse e-mail validée de caltech.edu
Chris MyersUniversity of UtahAdresse e-mail validée de ece.utah.edu
Martin ScharmHead of IT @ Dept. of Systems Biology and BioinformaticsAdresse e-mail validée de binfalse.de
Falk SchreiberProfessor, University of Konstanz and Monash UniversityAdresse e-mail validée de uni-konstanz.de
Brett G. OlivierVrije Universiteit AmsterdamAdresse e-mail validée de vu.nl
Jonathan CooperUniversity College LondonAdresse e-mail validée de ucl.ac.uk
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaAdresse e-mail validée de virginia.edu
Herbert M SauroUniversity of WashingtonAdresse e-mail validée de u.washington.edu
Andreas DrägerProfessor for Data Analytics and BioinformaticsAdresse e-mail validée de informatik.uni-halle.de
Claudine ChaouiyaI2M UMR 7373, Aix Marseille University (France)Adresse e-mail validée de univ-amu.fr
Padraig GleesonDepartment of Neuroscience, Physiology and Pharmacology, University College LondonAdresse e-mail validée de ucl.ac.uk
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoAdresse e-mail validée de utoronto.ca
Darren WilkinsonProfessor of Statistics, Durham University, U.K.Adresse e-mail validée de durham.ac.uk
Bjorn SommerRoyal College of ArtAdresse e-mail validée de rca.ac.uk
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamAdresse e-mail validée de sun.ac.za
Nicolas RodriguezSenior Software Systems and Database Architect, Babraham InstituteAdresse e-mail validée de babraham.ac.uk
Rahuman S Malik SheriffEMBL-EBI, Cambridge, UKAdresse e-mail validée de ebi.ac.uk

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Dagmar Waltemath

Professor of Medical Informatics

Adresse e-mail validée de uni-greifswald.de - Page d'accueil

biomedical research data management data integration


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knupfer, D Waltemath, A Zhukova, A Drager, ... Molecular Systems Biology 7 (543), 2011	344	2011
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5, 1-10, 2011	306	2011
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	254	2020
Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011	174	2011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15, 1-9, 2014	167	2014
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 20190021, 2019	116	2019
The systems biology markup language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 20170081, 2018	104	2018
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in bioengineering and biotechnology 3, 19, 2015	95	2015
SED-ML–An XML Format for the Implementation of the MIASE Guidelines D Köhn, N Le Novere International Conference on Computational Methods in Systems Biology, 176-190, 2008	79	2008
Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019	75	2019
Combining computational models, semantic annotations and simulation experiments in a graph database R Henkel, O Wolkenhauer, D Waltemath Database 2015, bau130, 2015	66	2015
Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016	65	2016
A call for virtual experiments: accelerating the scientific process J Cooper, JO Vik, D Waltemath Progress in biophysics and molecular biology 117 (1), 99-106, 2015	61	2015
How modeling standards, software, and initiatives support reproducibility in systems biology and systems medicine D Waltemath, O Wolkenhauer IEEE Transactions on Biomedical Engineering 63 (10), 1999-2006, 2016	59	2016
Initiatives, concepts, and implementation practices of FAIR (findable, accessible, interoperable, and reusable) data principles in health data stewardship practice: protocol … ET Inau, J Sack, D Waltemath, AA Zeleke JMIR research protocols 10 (2), e22505, 2021	51	2021
Democratizing knowledge representation with BioCypher S Lobentanzer, P Aloy, J Baumbach, B Bohar, VJ Carey, P Charoentong, ... Nature Biotechnology 41 (8), 1056-1059, 2023	43	2023
Specifications of standards in systems and synthetic biology: status and developments in 2020 F Schreiber, B Sommer, T Czauderna, M Golebiewski, TE Gorochowski, ... Journal of integrative bioinformatics 17 (2-3), 20200022, 2020	42	2020
Ranked retrieval of computational biology models R Henkel, L Endler, A Peters, N Le Novère, D Waltemath BMC bioinformatics 11, 1-12, 2010	42	2010
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE) D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ... Journal of integrative bioinformatics 17 (2-3), 20200005, 2020	37	2020
Improving the reuse of computational models through version control D Waltemath, R Henkel, R Hälke, M Scharm, O Wolkenhauer Bioinformatics 29 (6), 742-748, 2013	36	2013

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