Dan Knights

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDAdresse e-mail validée de ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityAdresse e-mail validée de nau.edu
Tonya WardDiversigen, Inc.Adresse e-mail validée de diversigen.com
Pajau VangayHypothesis FundAdresse e-mail validée de hypothesisfund.org
Jose C. ClementeAssociate Professor, Icahn School of Medicine at Mount SinaiAdresse e-mail validée de mssm.edu
Robin Shields-CutlerMacalester CollegeAdresse e-mail validée de macalester.edu
Jonathan B. ClaytonAssistant ProfessorAdresse e-mail validée de unomaha.edu
Benjamin HillmannGraduate Student, University of Minnesota - Twin CitiesAdresse e-mail validée de umn.edu
Catherine LozuponeAssociate Professor of Medicine, University of Colorado, DenverAdresse e-mail validée de ucdenver.edu
Justin KuczynskiScientist, Second GenomeAdresse e-mail validée de secondgenome.com
Christian L LauberNationwide Children's HospitalAdresse e-mail validée de nationwidechildrens.org
Antonio GonzálezProgrammer Analyst, UC San DiegoAdresse e-mail validée de ucsd.edu
Purna C. Kashyap, MBBSDepartment of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MNAdresse e-mail validée de mayo.edu
Emmanuel MontassierComputer Science and EngineeringAdresse e-mail validée de umn.edu
Jesse RR ZaneveldAssociate Professor, Division of Biological Sciences, University of Washington, BothellAdresse e-mail validée de uw.edu
Abigail J. JohnsonUniversity of MinnesotaAdresse e-mail validée de umn.edu
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthAdresse e-mail validée de hsph.harvard.edu
Ran BlekhmanAssociate Professor, University of ChicagoAdresse e-mail validée de uchicago.edu
Timothy J JohnsonUniversity of MinnesotaAdresse e-mail validée de umn.edu
Tanya YatsunenkoBMSAdresse e-mail validée de wustl.edu

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Dan Knights

University of Minnesota

Adresse e-mail validée de umn.edu - Page d'accueil

Computational Biology Machine Learning Bioinformatics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010	36472	2010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	17398	2019
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	10901	2012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013	9038	2013
Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012	8737	2012
Linking long-term dietary patterns with gut microbial enterotypes GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ... Science 334 (6052), 105-108, 2011	7460	2011
The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014	3555	2014
UniFrac: an effective distance metric for microbial community comparison C Lozupone, ME Lladser, D Knights, J Stombaugh, R Knight The ISME journal 5 (2), 169-172, 2011	2827	2011
A framework for human microbiome research nature 486 (7402), 215-221, 2012	2507	2012
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans BD Muegge, J Kuczynski, D Knights, JC Clemente, A González, ... Science 332 (6032), 970-974, 2011	2124	2011
Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761-763, 2011	1633	2011
Moving pictures of the human microbiome JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ... Genome biology 12, 1-8, 2011	1372	2011
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor MI Smith, T Yatsunenko, MJ Manary, I Trehan, R Mkakosya, J Cheng, ... Science 339 (6119), 548-554, 2013	1334	2013
Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... elife 2, e00458, 2013	1276	2013
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	1036	2018
Enterotypes in the landscape of gut microbial community composition PI Costea, F Hildebrand, M Arumugam, F Bäckhed, MJ Blaser, ... Nature microbiology 3 (1), 8-16, 2018	1015	2018
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies DM Gohl, P Vangay, J Garbe, A MacLean, A Hauge, A Becker, TJ Gould, ... Nature biotechnology 34 (9), 942-949, 2016	769	2016
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415-420, 2011	767	2011
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018	752	2018
US immigration westernizes the human gut microbiome P Vangay, AJ Johnson, TL Ward, GA Al-Ghalith, RR Shields-Cutler, ... Cell 175 (4), 962-972. e10, 2018	718	2018

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