Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats Y Hwang, S Roux, C Coclet, SJE Krause, PR Girguis Nature Microbiology 8 (5), 946-957, 2023 | 55 | 2023 |
Genomic language model predicts protein co-regulation and function Y Hwang, AL Cornman, EH Kellogg, S Ovchinnikov, PR Girguis Nature communications 15 (1), 2880, 2024 | 45 | 2024 |
Diverse viruses carrying genes for microbial extremotolerance in the Atacama Desert hyperarid soil Y Hwang, J Rahlff, D Schulze-Makuch, M Schloter, AJ Probst Msystems 6 (3), 10.1128/msystems. 00385-21, 2021 | 35 | 2021 |
Microbial hotspots in lithic microhabitats inferred from DNA fractionation and metagenomics in the Atacama Desert D Schulze-Makuch, D Lipus, FL Arens, M Baqué, TLV Bornemann, ... Microorganisms 9 (5), 1038, 2021 | 31 | 2021 |
Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core Y Hwang, D Schulze-Makuch, FL Arens, JS Saenz, PS Adam, C Sager, ... Microbiome 9, 1-17, 2021 | 27 | 2021 |
Microbial hotspots in lithic microhabitats inferred from DNA fractionation and metagenomics in the Atacama Desert. Microorganisms 9: 1038 D Schulze-Makuch, D Lipus, FL Arens, M Baqué, TLV Bornemann, ... | 5 | 2021 |
Diverse viruses carrying genes for microbial extremotolerance in the Atacama Desert hyperarid soil. mSystems 6: e00385-21 Y Hwang, J Rahlff, D Schulze-Makuch, M Schloter, AJ Probst | 5 | 2021 |
The OMG dataset: An Open MetaGenomic corpus for mixed-modality genomic language modeling A Cornman, J West-Roberts, AP Camargo, S Roux, M Beracochea, ... bioRxiv, 2024.08. 14.607850, 2024 | 4 | 2024 |
Differentiated evolutionary strategies of genetic diversification in Atlantic and Pacific Thaumarchaeal populations Y Hwang, PR Girguis Msystems 7 (3), e01477-21, 2022 | 4 | 2022 |
Diverse genomic embedding benchmark for functional evaluation across the tree of life J West-Roberts, J Kravitz, N Jha, A Cornman, Y Hwang bioRxiv, 2024.07. 10.602933, 2024 | 3 | 2024 |
Leave no stone unturned: The hidden potential of carbon and nitrogen cycling by novel, highly adapted Thaumarchaeota in the Atacama Desert hyperarid core Y Hwang, D Schulze-Makuch, FL Arens, JS Saenz, PS Adam, ... BioRxiv, 2020.07. 17.208546, 2020 | 1 | 2020 |
Machine learning systems and methods for deep learning of genomic contexts Y Hwang, S Ovchinnikov US Patent App. 18/605,451, 2024 | | 2024 |
Gaia: A Context-Aware Sequence Search and Discovery Tool for Microbial Proteins N Jha, J Kravitz, J West-Roberts, A Camargo, S Roux, A Cornman, ... bioRxiv, 2024.11. 19.624387, 2024 | | 2024 |
Evolution of genomic diversity in natural microbial populations Y Hwang Harvard University, 2024 | | 2024 |
Scientists leave no stone unturned in their hunt for unique desert-adapted microbes Y Hwang, D Schulze-Makuch, F Arens, J Saenz, P Adam, C Sager, ... | | 2022 |