| Targeting the 16s rRNA gene for bacterial identification in complex mixed samples: Comparative evaluation of second (illumina) and third (oxford nanopore technologies … R Winand, B Bogaerts, S Hoffman, L Lefevre, M Delvoye, J Van Braekel, ... International journal of molecular sciences 21 (1), 298, 2019 | 211 | 2019 |
| Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus B Berbers, A Saltykova, C Garcia-Graells, P Philipp, F Arella, K Marchal, ... Scientific reports 10 (1), 4310, 2020 | 86 | 2020 |
| dendsort: modular leaf ordering methods for dendrogram representations in R R Sakai, R Winand, T Verbeiren, AV Moere, J Aerts F1000Research 3, 177, 2014 | 70 | 2014 |
| Validation of a bioinformatics workflow for routine analysis of whole-genome sequencing data and related challenges for pathogen typing in a European National Reference Center … B Bogaerts, R Winand, Q Fu, J Van Braekel, PJ Ceyssens, W Mattheus, ... Frontiers in microbiology 10, 362, 2019 | 55 | 2019 |
| DNA methylation analysis of Homeobox genes implicates HOXB7 hypomethylation as risk factor for neural tube defects A Rochtus, B Izzi, E Vangeel, S Louwette, C Wittevrongel, D Lambrechts, ... Epigenetics 10 (1), 92-101, 2015 | 46 | 2015 |
| In vitro screening of embryos by whole-genome sequencing: now, in the future or never? R Winand, K Hens, W Dondorp, G de Wert, Y Moreau, JR Vermeesch, ... Human Reproduction 29 (4), 842-851, 2014 | 38 | 2014 |
| Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO MA Fraiture, A Saltykova, S Hoffman, R Winand, D Deforce, K Vanneste, ... Scientific reports 8 (1), 7903, 2018 | 36 | 2018 |
| Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively … B Bogaerts, S Nouws, B Verhaegen, S Denayer, J Van Braekel, R Winand, ... Microbial genomics 7 (3), 000531, 2021 | 33 | 2021 |
| Concentrations and distribution of chlorinated paraffins in Belgian foods TJ McGrath, F Limonier, G Poma, J Bombeke, R Winand, K Vanneste, ... Environmental Pollution 291, 118236, 2021 | 27 | 2021 |
| A bioinformatics whole-genome sequencing workflow for clinical mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively … B Bogaerts, T Delcourt, K Soetaert, S Boarbi, PJ Ceyssens, R Winand, ... Journal of Clinical Microbiology 59 (6), 10.1128/jcm. 00202-21, 2021 | 27 | 2021 |
| Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case M Deckers, K Vanneste, R Winand, SCJ De Keersmaecker, S Denayer, ... Food chemistry 305, 125431, 2020 | 27 | 2020 |
| Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube … A Rochtus, R Winand, G Laenen, E Vangeel, B Izzi, C Wittevrongel, ... Clinical Epigenetics 8, 1-12, 2016 | 24 | 2016 |
| Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals R Winand, K Theys, M Eusébio, J Aerts, RJ Camacho, P Gomes, ... Aids 29 (15), 2045-2052, 2015 | 23 | 2015 |
| Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples S Van Borm, Q Fu, R Winand, K Vanneste, M Hakhverdyan, D Höper, ... Journal of Virological Methods 283, 113916, 2020 | 20 | 2020 |
| Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations B Bogaerts, R Winand, J Van Braekel, S Hoffman, NHC Roosens, ... Microbial Genomics 7 (11), 000699, 2021 | 17 | 2021 |
| Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A (H3N2) outbreak season allows improved surveillance LAE Van Poelvoorde, B Bogaerts, Q Fu, SCJ De Keersmaecker, I Thomas, ... Microbial Genomics 7 (9), 000643, 2021 | 15 | 2021 |
| Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing MA Fraiture, B Bogaerts, R Winand, M Deckers, N Papazova, K Vanneste, ... Scientific Reports 10 (1), 7094, 2020 | 14 | 2020 |
| Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations M Deckers, K Vanneste, R Winand, M Hendrickx, P Becker, ... Food Control 117, 107295, 2020 | 12 | 2020 |
| Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus. Sci Rep 10: 4310 B Berbers, A Saltykova, C Garcia-Graells, P Philipp, F Arella, K Marchal, ... | 7 | 2020 |
| Next-generation sequencing: a key tool to identify unauthorized genetically modified microorganisms in food enzyme preparations MA Fraiture, B Bogaerts, R Winand, M Deckers, N Papazova, K Vanneste, ... Sci. Rep 10, 7094, 2020 | 7 | 2020 |
