| DrugMAP: molecular atlas and pharma-information of all drugs F Li, J Yin, M Lu, M Mou, Z Li, Z Zeng, Y Tan, S Wang, X Chu, H Dai, ... Nucleic acids research 51 (D1), D1288-D1299, 2023 | 73 | 2023 |
| PFmulDL: a novel strategy enabling multi-class and multi-label protein function annotation by integrating diverse deep learning methods W Xia, L Zheng, J Fang, F Li, Y Zhou, Z Zeng, B Zhang, Z Li, H Li, F Zhu Computers in Biology and Medicine 145, 105465, 2022 | 66 | 2022 |
| ConSIG: consistent discovery of molecular signature from OMIC data F Li, J Yin, M Lu, Q Yang, Z Zeng, B Zhang, Z Li, Y Qiu, H Dai, Y Chen, ... Briefings in bioinformatics 23 (4), bbac253, 2022 | 58 | 2022 |
| Attention and memory-augmented networks for dual-view sequential learning Y He, C Wang, N Li, Z Zeng Proceedings of the 26th ACM SIGKDD International Conference on Knowledge …, 2020 | 46 | 2020 |
| A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder Y Wang, Z Pan, M Mou, W Xia, H Zhang, H Zhang, J Liu, L Zheng, Y Luo, ... Nucleic acids research 51 (21), e110-e110, 2023 | 33 | 2023 |
| AnnoPRO: a strategy for protein function annotation based on multi-scale protein representation and a hybrid deep learning of dual-path encoding L Zheng, S Shi, M Lu, P Fang, Z Pan, H Zhang, Z Zhou, H Zhang, M Mou, ... Genome biology 25 (1), 41, 2024 | 32 | 2024 |
| Using artificial intelligence to document the hidden RNA virosphere X Hou, Y He, P Fang, SQ Mei, Z Xu, WC Wu, JH Tian, S Zhang, ZY Zeng, ... Cell 187 (24), 6929-6942. e16, 2024 | 28 | 2024 |
| UUKG: unified urban knowledge graph dataset for urban spatiotemporal prediction Y Ning, H Liu, H Wang, Z Zeng, H Xiong Advances in Neural Information Processing Systems 36, 2024 | 25 | 2024 |
| MoDAFold: a strategy for predicting the structure of missense mutant protein based on AlphaFold2 and molecular dynamics L Zheng, S Shi, X Sun, M Lu, Y Liao, S Zhu, H Zhang, Z Pan, P Fang, ... Briefings in bioinformatics 25 (2), bbae006, 2024 | 20 | 2024 |
| KG-MTT-BERT: Knowledge graph enhanced BERT for multi-type medical text classification Y He, C Wang, S Zhang, N Li, Z Li, Z Zeng arXiv preprint arXiv:2210.03970, 2022 | 16 | 2022 |
| Artificial intelligence redefines RNA virus discovery M Shi, X Hou, Y He, P Fang, SQ Mei, Z Xu, WC Wu, J Tian, S Zhang, ... | 15 | 2023 |
| Biological activities of drug inactive ingredients C Zhang, M Mou, Y Zhou, W Zhang, X Lian, S Shi, M Lu, H Sun, F Li, ... Briefings in Bioinformatics 23 (5), bbac160, 2022 | 13 | 2022 |
| Dbcopilot: Scaling natural language querying to massive databases T Wang, H Lin, X Han, L Sun, X Chen, H Wang, Z Zeng arXiv preprint arXiv:2312.03463, 2023 | 10 | 2023 |
| LucaOne: Generalized Biological Foundation Model with Unified Nucleic Acid and Protein Language Y He, P Fang, Y Shan, Y Pan, Y Wei, Y Chen, Y Chen, Y Liu, Z Zeng, ... bioRxiv, 2024.05. 10.592927, 2024 | 8 | 2024 |
| Understanding common human driving semantics for autonomous vehicles Y Xia, M Geng, Y Chen, S Sun, C Liao, Z Zhu, Z Li, WY Ochieng, ... Patterns 4 (7), 2023 | 7 | 2023 |
| RNAenrich: a web server for non-coding RNA enrichment S Zhang, K Amahong, Y Zhang, X Hu, S Huang, M Lu, Z Zeng, Z Li, ... Bioinformatics 39 (7), btad421, 2023 | 6 | 2023 |
| A knowledge-enhanced framework for imitative transportation trajectory generation Q Zhu, Y Chen, H Wang, Z Zeng, H Liu 2022 IEEE International Conference on Data Mining (ICDM), 823-832, 2022 | 4 | 2022 |
| Match, Compare, or Select? An Investigation of Large Language Models for Entity Matching T Wang, X Chen, H Lin, X Chen, X Han, H Wang, Z Zeng, L Sun arXiv preprint arXiv:2405.16884, 2024 | 3 | 2024 |
| A Multi-Head Self-Attention-based on GRU Encoder-Decoder Framework for Predicting Molten Iron Silicon Content Y Cai, C Yang, S Lou, Z Zeng, H Liao, B Zhang 2023 IEEE 12th Data Driven Control and Learning Systems Conference (DDCLS …, 2023 | 3 | 2023 |
| Improved Optimization Method for Blast Furnace Based on Robust Soft Sensor and Process Knowledge Y Zhang, C Yang, Z Zeng, L Kong, H Liao, B Zhang 2022 China Automation Congress (CAC), 4805-4810, 2022 | 2 | 2022 |
