A methodology for cohort harmonisation in multicentre clinical research JR Almeida, LB Silva, I Bos, PJ Visser, JL Oliveira Informatics in Medicine Unlocked 27, 100760, 2021 | 30 | 2021 |
GTO: a toolkit to unify pipelines in genomic and proteomic research J Almeida, A Pinho, J Oliveira, O Fajarda, D Pratas SoftwareX 12, 2020 | 21 | 2020 |
Strategies to Access Patient Clinical Data from Distributed Databases JR Almeida, O Fajarda, A Pereira, JL Oliveira Proceedings of the 12th International Joint Conference on Biomedical …, 2019 | 20 | 2019 |
A recommender system to help discovering cohorts in rare diseases JR Almeida, E Monteiro, LB Silva, AP Sierra, JL Oliveira 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems …, 2020 | 18 | 2020 |
Etl framework for real-time business intelligence over medical imaging repositories TM Godinho, R Lebre, JR Almeida, C Costa Journal of digital imaging 32, 870-879, 2019 | 17 | 2019 |
Development and external validation of prediction models for adverse health outcomes in rheumatoid arthritis: a multinational real-world cohort analysis C Yang, RD Williams, JN Swerdel, JR Almeida, ES Brouwer, E Burn, ... Seminars in arthritis and rheumatism 56, 152050, 2022 | 16 | 2022 |
Chemical identification and indexing in PubMed full-text articles using deep learning and heuristics T Almeida, R Antunes, J F. Silva, JR Almeida, S Matos Database 2022, baac047, 2022 | 15 | 2022 |
TASKA: a modular task management system to support health research studies JR Almeida, R Gini, G Roberto, P Rijnbeek, JL Oliveira BMC medical informatics and decision making 19, 1-9, 2019 | 14 | 2019 |
A Modular Workflow Management Framework. JR Almeida, R Ribeiro, JL Oliveira Proceedings of the 11th International Joint Conference on Biomedical …, 2018 | 14 | 2018 |
A two-stage workflow to extract and harmonize drug mentions from clinical notes into observational databases JR Almeida, JF Silva, S Matos, JL Oliveira Journal of Biomedical Informatics 120, 103849, 2021 | 13 | 2021 |
Open source solutions for vulnerability assessment: A comparative analysis DB Cruz, JR Almeida, JL Oliveira IEEE Access 11, 100234-100255, 2023 | 12 | 2023 |
Rule-based extraction of family history information from clinical notes JR Almeida, S Matos Proceedings of the 35th annual ACM symposium on applied computing, 670-675, 2020 | 10 | 2020 |
Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII R Leaman, R Islamaj, V Adams, MA Alliheedi, JR Almeida, R Antunes, ... Database 2023, baad005, 2023 | 9 | 2023 |
Services orchestration and workflow management in distributed medical imaging environments JR Almeida, TM Godinho, LB Silva, C Costa, JL Oliveira 2018 IEEE 31st International Symposium on Computer-Based Medical Systems …, 2018 | 9 | 2018 |
A FAIR approach to real-world health data management and analysis JR Almeida, JM Silva, JL Oliveira 2023 IEEE 36th International Symposium on Computer-Based Medical Systems …, 2023 | 8 | 2023 |
Querying semantic catalogues of biomedical databases A Pereira, JR Almeida, RP Lopes, JL Oliveira Journal of Biomedical Informatics 137, 104272, 2023 | 8 | 2023 |
A secure architecture for exploring patient-level databases from distributed institutions JR Almeida, JP Barraca, JL Oliveira 2022 IEEE 35th International Symposium on Computer-Based Medical Systems …, 2022 | 8 | 2022 |
Extraction of family history information from clinical notes: deep learning and heuristics approach JF Silva, JR Almeida, S Matos JMIR medical informatics 8 (12), e22898, 2020 | 8 | 2020 |
Clinical Concept Normalization on Medical Records Using Word Embeddings and Heuristics MS FS João, A Rui, RA João Studies in health technology and informatics 270, 93, 2020 | 8* | 2020 |
Chemical detection and indexing in PubMed full text articles using deep learning and rule-based methods T Almeida, R Antunes, JF Silva, JR Almeida, S Matos CDR 1500, 15943, 2021 | 7 | 2021 |