| Sequencing depth and coverage: key considerations in genomic analyses D Sims, I Sudbery, NE Ilott, A Heger, CP Ponting Nature Reviews Genetics 15 (2), 121-132, 2014 | 1825 | 2014 |
| The short chain fatty acid butyrate imprints an antimicrobial program in macrophages J Schulthess, S Pandey, M Capitani, KC Rue-Albrecht, I Arnold, ... Immunity 50 (2), 432-445. e7, 2019 | 876 | 2019 |
| Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes NE Ilott, JA Heward, B Roux, E Tsitsiou, PS Fenwick, L Lenzi, I Goodhead, ... Nature communications 5 (1), 3979, 2014 | 314 | 2014 |
| Epithelial-derived IL-18 regulates Th17 cell differentiation and Foxp3+ Treg cell function in the intestine OJ Harrison, N Srinivasan, J Pott, C Schiering, T Krausgruber, NE Ilott, ... Mucosal immunology 8 (6), 1226-1236, 2015 | 233 | 2015 |
| A large polysaccharide produced by Helicobacter hepaticus induces an anti-inflammatory gene signature in macrophages C Danne, G Ryzhakov, M Martínez-López, NE Ilott, F Franchini, F Cuskin, ... Cell host & microbe 22 (6), 733-745. e5, 2017 | 131 | 2017 |
| Predicting long non-coding RNAs using RNA sequencing NE Ilott, CP Ponting Methods 63 (1), 50-59, 2013 | 124 | 2013 |
| Tuning the transcriptional response to hypoxia by inhibiting hypoxia-inducible factor (HIF) prolyl and asparaginyl hydroxylases MC Chan, NE Ilott, J Schödel, D Sims, A Tumber, K Lippl, DR Mole, ... Journal of Biological Chemistry 291 (39), 20661-20673, 2016 | 120 | 2016 |
| Prenatal exposure to nicotine impairs performance of the 5-choice serial reaction time task in adult rats T Schneider, N Ilott, G Brolese, L Bizarro, PJE Asherson, IP Stolerman Neuropsychopharmacology 36 (5), 1114-1125, 2011 | 106 | 2011 |
| Deconvolution of monocyte responses in inflammatory bowel disease reveals an IL-1 cytokine network that regulates IL-23 in genetic and acquired IL-10 resistance D Aschenbrenner, M Quaranta, S Banerjee, N Ilott, J Jansen, B Steere, ... Gut 70 (6), 1023-1036, 2021 | 88 | 2021 |
| CGAT: computational genomics analysis toolkit D Sims, NE Ilott, SN Sansom, IM Sudbery, JS Johnson, KA Fawcett, ... Bioinformatics 30 (9), 1290-1291, 2014 | 81 | 2014 |
| Foxp3+ T reg cells control psoriasiform inflammation by restraining an IFN-I–driven CD8+ T cell response K Stockenhuber, AN Hegazy, NR West, NE Ilott, A Stockenhuber, ... Journal of Experimental Medicine 215 (8), 1987-1998, 2018 | 65 | 2018 |
| Alpha kinase 1 controls intestinal inflammation by suppressing the IL-12/Th1 axis G Ryzhakov, NR West, F Franchini, S Clare, NE Ilott, SN Sansom, ... Nature communications 9 (1), 3797, 2018 | 61 | 2018 |
| Gut microbiota: sculptors of the intestinal stem cell niche in health and inflammatory bowel disease M Markandey, A Bajaj, NE Ilott, S Kedia, S Travis, F Powrie, V Ahuja Gut Microbes 13 (1), 1990827, 2021 | 53 | 2021 |
| A genetic study of ADHD and activity level in infancy N Ilott, KJ Saudino, A Wood, P Asherson Genes, Brain and Behavior 9 (3), 296-304, 2010 | 48 | 2010 |
| Accurate identification and quantification of commensal microbiota bound by host immunoglobulins MA Jackson, C Pearson, NE Ilott, KE Huus, AN Hegazy, J Webber, ... Microbiome 9, 1-22, 2021 | 45 | 2021 |
| The bacteriology of pleural infection (TORPIDS): an exploratory metagenomics analysis through next generation sequencing NI Kanellakis, JM Wrightson, S Gerry, N Ilott, JP Corcoran, EO Bedawi, ... The Lancet Microbe 3 (4), e294-e302, 2022 | 44 | 2022 |
| Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling NE Ilott, J Bollrath, C Danne, C Schiering, M Shale, K Adelmann, ... The ISME journal 10 (10), 2389-2404, 2016 | 44 | 2016 |
| CGAT-core: a python framework for building scalable, reproducible computational biology workflows AP Cribbs, S Luna-Valero, C George, IM Sudbery, AJ Berlanga-Taylor, ... bioRxiv, 581009, 2019 | 35 | 2019 |
| Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes KN Thompson, KS Bonham, NE Ilott, GJ Britton, P Colmenero, SJ Bullers, ... Science translational medicine 15 (706), eabn4722, 2023 | 31 | 2023 |
| Testing for the mediating role of endophenotypes using molecular genetic data in a twin study of ADHD traits R Pinto, P Asherson, N Ilott, CHM Cheung, J Kuntsi American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 171 …, 2016 | 29 | 2016 |