JA Izaguirre

Citirano

	Sve	Od 2020.
Citati	4362	1189
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Suautori

Justin M WozniakComputer Scientist, Argonne National LaboratoryPotvrđena adresa e-pošte na anl.gov
Douglas ThainProfessor, University of Notre DamePotvrđena adresa e-pošte na nd.edu
James A GlazierIndiana UniversityPotvrđena adresa e-pošte na indiana.edu
Stuart A. NewmanNew York Medical CollegePotvrđena adresa e-pošte na nymc.edu
Faruck MorcosUniversity of Texas at Dallas - Dept. Biological SciencesPotvrđena adresa e-pošte na utdallas.edu
Aaron StriegelProfessor, Department of Computer Science and Engineering, University of Notre DamePotvrđena adresa e-pošte na nd.edu
H. George. E. HentschelProfessor of Physics, Emory UniversityPotvrđena adresa e-pošte na physics.emory.edu
Tilmann GlimmProfessor of Mathematics, Western Washington UniversityPotvrđena adresa e-pošte na wwu.edu
Eric DarveStanfordPotvrđena adresa e-pošte na stanford.edu
Vijay PandeAndreessen Horowitz, Stanford UniversityPotvrđena adresa e-pošte na stanford.edu
Troy RaederTwo SigmaPotvrđena adresa e-pošte na twosigma.com
Kedar ArasAssistant Professor, Department of Physiology & Biophysics, Jacobs School of Medicine SUNY BuffaloPotvrđena adresa e-pošte na buffalo.edu
Maria Ercsey-RavaszResearcher, Babeș-Bolyai UniversityPotvrđena adresa e-pošte na ubbcluj.ro
Matthew JacobsonUCSFPotvrđena adresa e-pošte na ucsf.edu
Roberto López-RendónUniversidad Autónoma del Estado de MéxicoPotvrđena adresa e-pošte na uaemex.mx
Danny Z ChenProfessor of Computer Science & Engineering, University of Notre DamePotvrđena adresa e-pošte na nd.edu
Sebastian ReichUniversity of PotsdamPotvrđena adresa e-pošte na uni-potsdam.de
Christopher McClendonSenior Principal Scientist, PfizerPotvrđena adresa e-pošte na pfizer.com
Roeland MerksProfessor of Mathematical Biology, Mathematical Institute and Institute of Biology, LeidenPotvrđena adresa e-pošte na math.leidenuniv.nl
Nan ChenComputational Scientist at University of Texas, M.D. Anderson Cancer CenterPotvrđena adresa e-pošte na mdanderson.org

Prati

JA Izaguirre

Notre Dame

Potvrđena adresa e-pošte na nd.edu

Computational molecular biophysics protein folding molecular dynamics numerical methods parallel computing


Naslov Poredaj po navodima Poredaj po godini Poredaj po naslovu	Citirano Citirano	Godina
Langevin stabilization of molecular dynamics JA Izaguirre, DP Catarello, JM Wozniak, RD Skeel The Journal of chemical physics 114 (5), 2090-2098, 2001	1121	2001
CompuCell, a multi-model framework for simulation of morphogenesis JA Izaguirre, R Chaturvedi, C Huang, T Cickovski, J Coffland, G Thomas, ... Bioinformatics 20 (7), 1129-1137, 2004	292	2004
Longer time steps for molecular dynamics JA Izaguirre, S Reich, RD Skeel The Journal of chemical physics 110 (20), 9853-9864, 1999	250	1999
An impulse integrator for Langevin dynamics RD Skeel, JA Izaguirre Molecular Physics 100 (24), 3885-3891, 2002	182	2002
A framework for three-dimensional simulation of morphogenesis TM Cickovski, C Huang, R Chaturvedi, T Glimm, HGE Hentschel, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 273-288, 2005	167	2005
On multiscale approaches to three-dimensional modelling of morphogenesis R Chaturvedi, C Huang, B Kazmierczak, T Schneider, JA Izaguirre, ... Journal of the Royal Society interface 2 (3), 237-253, 2005	159	2005
A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis N Chen, JA Glazier, JA Izaguirre, MS Alber Computer physics communications 176 (11-12), 670-681, 2007	141	2007
ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics T Matthey, T Cickovski, S Hampton, A Ko, Q Ma, M Nyerges, T Raeder, ... ACM Transactions on Mathematical Software (TOMS) 30 (3), 237-265, 2004	135	2004
Shadow hybrid Monte Carlo: an efficient propagator in phase space of macromolecules JA Izaguirre, SS Hampton Journal of Computational Physics 200 (2), 581-604, 2004	124	2004
Work queue+ python: A framework for scalable scientific ensemble applications P Bui, D Rajan, B Abdul-Wahid, J Izaguirre, D Thain Workshop on python for high performance and scientific computing at sc11, 2011	120	2011
Verlet-I/r-RESPA/Impulse is limited by nonlinear instabilities Q Ma, JA Izaguirre, RD Skeel SIAM Journal on Scientific Computing 24 (6), 1951-1973, 2003	117	2003
Predicting protein-protein interactions from protein domains using a set cover approach C Huang, F Morcos, SP Kanaan, S Wuchty, DZ Chen, JA Izaguirre IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 78-87, 2007	95	2007
Modeling conformational ensembles of slow functional motions in Pin1-WW F Morcos, S Chatterjee, CL McClendon, PR Brenner, R López-Rendón, ... PLoS computational biology 6 (12), e1001015, 2010	89	2010
From genes to organisms via the cell: a problem-solving environment for multicellular development T Cickovski, K Aras, M Swat, RMH Merks, T Glimm, HGE Hentschel, ... Computing in science & engineering 9 (4), 50-60, 2007	77	2007
Converting a high performance application to an elastic cloud application D Rajan, A Canino, JA Izaguirre, D Thain 2011 IEEE Third International Conference on Cloud Computing Technology and …, 2011	74	2011
Accelerating the replica exchange method through an efficient all-pairs exchange P Brenner, CR Sweet, D VonHandorf, JA Izaguirre The Journal of chemical physics 126 (7), 2007	67	2007
Multiscale dynamics of macromolecules using normal mode Langevin JA Izaguirre, CR Sweet, VS Pande Biocomputing 2010, 240-251, 2010	65	2010
BioCoRE: a collaboratory for structural biology M Bhandarkar, G Budescu, WF Humphrey, JA Izaguirre, S Izrailev, ... Simulation Series 31, 242-251, 1999	61	1999
Parallel multigrid summation for the N-body problem JA Izaguirre, SS Hampton, T Matthey Journal of Parallel and Distributed Computing 65 (8), 949-962, 2005	55	2005
Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ... Nature communications 13 (1), 5884, 2022	52	2022

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