Jesper Ferkinghoff-Borg

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Thomas HamelryckProfessor in Machine Learning, BIO/DIKU, University of CopenhagenPotvrđena adresa e-pošte na bio.ku.dk
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenPotvrđena adresa e-pošte na di.ku.dk
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Potvrđena adresa e-pošte na dtu.dk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenPotvrđena adresa e-pošte na bio.ku.dk
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDPotvrđena adresa e-pošte na leeds.ac.uk
Mogens H. JensenProfessor of Complex Systems, Niels Bohr InstitutePotvrđena adresa e-pošte na nbi.dk
Dr. Rune LindingHumboldt-Universität zu BerlinPotvrđena adresa e-pošte na hu-berlin.de
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayPotvrđena adresa e-pošte na uni.no
Thomas SamsTechnical University of DenmarkPotvrđena adresa e-pošte na dtu.dk
Poul OlesenEmeritus Professor of Theoretical Physics, Niels Bohr InstitutePotvrđena adresa e-pošte na nbi.dk
Kim SneppenProfessor at Niels Bohr Institute, Copenhagen UniversityPotvrđena adresa e-pošte na nbi.dk
Simon OlssonChalmers University of TechnologyPotvrđena adresa e-pošte na chalmers.se
Guido TianaUniversity of MilanoPotvrđena adresa e-pošte na unimi.it
Pengfei TianPrincipal Scientist, Lila Sciences / Flagship Labs 97, Inc. (FL97)Potvrđena adresa e-pošte na nih.gov
Kristoffer Enøe JohanssonDepartment of Biology, University of CopenhagenPotvrđena adresa e-pošte na bio.ku.dk
Tim HarderResearch Scientist at Philips ResearchPotvrđena adresa e-pošte na philips.com
Pedro BeltraoAssociate Professor, ETH ZurichPotvrđena adresa e-pošte na ethz.ch
Michael GivskovProfessor of Microbiology, Costerton Biofilm Center ISIM, University of CopenhagenPotvrđena adresa e-pošte na sund.ku.dk
Thomas BjarnsholtProfessor in Biofilms and Chronic InfectionsPotvrđena adresa e-pošte na sund.ku.dk
Thomas R. CoxGarvan Institute of Medical ResearchPotvrđena adresa e-pošte na garvan.org.au

Prati

Jesper Ferkinghoff-Borg

Associate Professor, Research Director, Novo Nordisk A/S

Potvrđena adresa e-pošte na novonordisk.com

Machine Learning Deep Learning protein dynamics - protein interaction networks - cellular communication - automatisation


Naslov Poredaj po navodima Poredaj po godini Poredaj po naslovu	Citirano Citirano	Godina
The FoldX web server: an online force field J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano Nucleic acids research 33 (suppl_2), W382-W388, 2005	2826	2005
Prediction of water and metal binding sites and their affinities by using the Fold-X force field JWH Schymkowitz, F Rousseau, IC Martins, J Ferkinghoff-Borg, F Stricher, ... Proceedings of the National Academy of Sciences 102 (29), 10147-10152, 2005	400	2005
A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008	212	2008
Combining experiments and simulations using the maximum entropy principle W Boomsma, J Ferkinghoff-Borg, K Lindorff-Larsen PLoS computational biology 10 (2), e1003406, 2014	203	2014
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs J Reumers, J Schymkowitz, J Ferkinghoff-Borg, F Stricher, L Serrano, ... Nucleic acids research 33 (suppl_1), D527-D532, 2005	187	2005
SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks M Ander, P Beltrao, B Di Ventura, J Ferkinghoff-Borg, M Foglierini, ... IEE Proceedings-Systems Biology 1 (1), 129-138, 2004	184	2004
Kinome-wide decoding of network-attacking mutations rewiring cancer signaling P Creixell, EM Schoof, CD Simpson, J Longden, CJ Miller, HJ Lou, ... Cell 163 (1), 202-217, 2015	180	2015
A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS computational biology 5 (6), e1000406, 2009	133	2009
Recognizing and defining true Ras binding domains II: in silico prediction based on homology modelling and energy calculations C Kiel, S Wohlgemuth, F Rousseau, J Schymkowitz, J Ferkinghoff-Borg, ... Journal of molecular biology 348 (3), 759-775, 2005	133	2005
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	100	2010
Similarity measures for protein ensembles K Lindorff-Larsen, J Ferkinghoff-Borg PloS one 4 (1), e4203, 2009	94	2009
Experimental parameterization of an energy function for the simulation of unfolded proteins AB Norgaard, J Ferkinghoff-Borg, K Lindorff-Larsen Biophysical journal 94 (1), 182-192, 2008	89	2008
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11, 1-14, 2010	70	2010
Quorum sensing regulation in Aeromonas hydrophila C Garde, T Bjarnsholt, M Givskov, TH Jakobsen, M Hentzer, A Claussen, ... Journal of molecular biology 396 (4), 849-857, 2010	62	2010
Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012	59	2012
Stop-and-go kinetics in amyloid fibrillation J Ferkinghoff-Borg, J Fonslet, CB Andersen, S Krishna, S Pigolotti, H Yagi, ... Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 82 (1 …, 2010	57	2010
Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm IE Sánchez, P Beltrao, F Stricher, J Schymkowitz, J Ferkinghoff-Borg, ... PLoS computational biology 4 (4), e1000052, 2008	52	2008
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013	48	2013
Optimized Monte Carlo analysis for generalized ensembles J Ferkinghoff-Borg The European Physical Journal B-Condensed Matter and Complex Systems 29, 481-484, 2002	48	2002
Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure T Lenaerts, J Ferkinghoff-Borg, F Stricher, L Serrano, JWH Schymkowitz, ... BMC structural biology 8, 1-15, 2008	45	2008

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