| Iterative correction of Hi-C data reveals hallmarks of chromosome organization M Imakaev, G Fudenberg, RP McCord, N Naumova, A Goloborodko, ... Nature methods 9 (10), 999-1003, 2012 | 1462 | 2012 |
| Hi–C: a comprehensive technique to capture the conformation of genomes JM Belton, RP McCord, JH Gibcus, N Naumova, Y Zhan, J Dekker Methods 58 (3), 268-276, 2012 | 1233 | 2012 |
| Condensin-driven remodelling of X chromosome topology during dosage compensation E Crane, Q Bian, RP McCord, BR Lajoie, BS Wheeler, EJ Ralston, ... Nature 523 (7559), 240-244, 2015 | 922 | 2015 |
| Spatial organization of the mouse genome and its role in recurrent chromosomal translocations Y Zhang, RP McCord, YJ Ho, BR Lajoie, DG Hildebrand, AC Simon, ... Cell 148 (5), 908-921, 2012 | 599 | 2012 |
| High-resolution DNA-binding specificity analysis of yeast transcription factors C Zhu, KJRP Byers, RP McCord, Z Shi, MF Berger, DE Newburger, ... Genome research 19 (4), 556-566, 2009 | 491 | 2009 |
| Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments VC Seitan, AJ Faure, Y Zhan, RP McCord, BR Lajoie, E Ing-Simmons, ... Genome research 23 (12), 2066-2077, 2013 | 374 | 2013 |
| Correlated alterations in genome organization, histone methylation, and DNA–lamin A/C interactions in Hutchinson-Gilford progeria syndrome RP McCord, A Nazario-Toole, H Zhang, PS Chines, Y Zhan, MR Erdos, ... Genome research 23 (2), 260-269, 2013 | 358 | 2013 |
| MORC family ATPases required for heterochromatin condensation and gene silencing G Moissiard, SJ Cokus, J Cary, S Feng, AC Billi, H Stroud, D Husmann, ... Science 336 (6087), 1448-1451, 2012 | 333 | 2012 |
| Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells AR Barutcu, BR Lajoie, RP McCord, CE Tye, D Hong, TL Messier, ... Genome biology 16, 1-14, 2015 | 239 | 2015 |
| Chromosome conformation capture and beyond: toward an integrative view of chromosome structure and function RP McCord, N Kaplan, L Giorgetti Molecular cell 77 (4), 688-708, 2020 | 191 | 2020 |
| Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights R Gordân, KF Murphy, RP McCord, C Zhu, A Vedenko, ML Bulyk Genome biology 12, 1-18, 2011 | 144 | 2011 |
| SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells AR Barutcu, BR Lajoie, AJ Fritz, RP McCord, JA Nickerson, ... Genome research 26 (9), 1188-1201, 2016 | 108 | 2016 |
| Radiation-induced DNA damage and repair effects on 3D genome organization JT Sanders, TF Freeman, Y Xu, R Golloshi, MA Stallard, AM Hill, ... Nature communications 11 (1), 6178, 2020 | 107 | 2020 |
| RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells AR Barutcu, D Hong, BR Lajoie, RP McCord, AJ van Wijnen, JB Lian, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (11 …, 2016 | 75 | 2016 |
| Yeast one-hybrid assays for gene-centered human gene regulatory network mapping JS Reece-Hoyes, AR Barutcu, RP McCord, JS Jeong, L Jiang, ... Nature methods 8 (12), 1050-1052, 2011 | 55 | 2011 |
| Analysis of force generation during flagellar assembly through optical trapping of free‐swimming Chlamydomonas reinhardtii RP McCord, JN Yukich, KK Bernd Cell motility and the cytoskeleton 61 (3), 137-144, 2005 | 43 | 2005 |
| Inferring condition‐specific transcription factor function from DNA binding and gene expression data RP McCord, MF Berger, AA Philippakis, ML Bulyk Molecular systems biology 3 (1), 100, 2007 | 38 | 2007 |
| SMILE: mutual information learning for integration of single-cell omics data Y Xu, P Das, RP McCord Bioinformatics 38 (2), 476-486, 2022 | 37 | 2022 |
| Iteratively improving Hi-C experiments one step at a time R Golloshi, JT Sanders, RP McCord Methods 142, 47-58, 2018 | 36 | 2018 |
| Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression R San Martin, P Das, R Dos Reis Marques, Y Xu, JM Roberts, JT Sanders, ... Journal of Cell Biology 221 (2), 2022 | 33 | 2022 |
