Michael M. Hoffman

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William Stafford NobleProfessor of Genome Sciences, University of WashingtonPotvrđena adresa e-pošte na uw.edu
Jeffrey A. BilmesProfessor of Electrical & Computer Engineering & Computer Science, University of Washington SeattlePotvrđena adresa e-pošte na uw.edu
Maxwell W LibbrechtAssistant Professor, Computing Science, Simon Fraser UniversityPotvrđena adresa e-pošte na sfu.ca
Anshul KundajeAssociate Professor, Dept. of Genetics, Dept. of Computer Science, Stanford UniversityPotvrđena adresa e-pošte na stanford.edu
Orion BuskePhenoTipsPotvrđena adresa e-pošte na cs.toronto.edu
Ewan BirneyDirector, EMBL-EBIPotvrđena adresa e-pošte na ebi.ac.uk
Mehran KarimzadehExai BioPotvrđena adresa e-pošte na exai.bio
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolPotvrđena adresa e-pošte na umassmed.edu
Shu Yi ShenUniversity Health NetworkPotvrđena adresa e-pošte na uhnresearch.ca
Bo WangChief AI Scientist,UHN; CIFAR AI Chair, Vector Institute; Assistant Professor, U of TorontoPotvrđena adresa e-pošte na vectorinstitute.ai
Anna GoldenbergScientist, SickKids Research Institute; Assistant Professor Department of Computer Science, University of TorontoPotvrđena adresa e-pošte na utoronto.ca
Danielle DeniskoPhD student, Bioinformatics and Integrative Genomics, Harvard Medical SchoolPotvrđena adresa e-pošte na g.harvard.edu
Scott V Bratman, MD PhDSenior Scientist (Principal Investigator), Princess Margaret Cancer Centre, University HealthPotvrđena adresa e-pošte na uhnresearch.ca
Daniel De CarvalhoProfessor, University of Toronto. Senior Scientist, Princess Margaret Cancer CentrePotvrđena adresa e-pošte na uhnresearch.ca
Coby VinerPostdoctoral Researcher, Department of Biology, University of PennsylvaniaPotvrđena adresa e-pošte na cs.toronto.edu
Casey S. GreeneBiomedical Informatics; Center for Health AI; University of Colorado Anschutz MedicalPotvrđena adresa e-pošte na cuanschutz.edu
Su-In LeeComputer Science & Engineering, University of WashingtonPotvrđena adresa e-pošte na cs.washington.edu
Jie WangTome BiosciencesPotvrđena adresa e-pošte na tome.bio
Ross C. HardisonProfessor Emeritus of Biochemistry and Molecular Biology, The Pennsylvania State UniversityPotvrđena adresa e-pošte na psu.edu
Manolis KellisProfessor of Computer Science, MIT and Broad InstitutePotvrđena adresa e-pošte na mit.edu

Prati

Michael M. Hoffman

Chair and Senior Scientist, University Health Network/Associate Professor, University of Toronto

Potvrđena adresa e-pošte na utoronto.ca - Početna stranica

Epigenomics Computational Genomics Machine Learning Computational Biology Bioinformatics


Naslov Poredaj po navodima Poredaj po godini Poredaj po naslovu	Citirano Citirano	Godina
An integrated Encyclopedia of DNA Elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57-74, 2012	17546	2012
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution International Chicken Genome Sequencing Consortium Nature 432 (7018), 695-716, 2004	2963*	2004
ChIP-seq guidelines and practices used by the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome Research 22 (9), 1813-31, 2012	2342	2012
Opportunities and obstacles for deep learning in biology and medicine T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... Journal of the royal society interface 15 (141), 20170387, 2018	2303	2018
A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011	1498	2011
Sensitive tumour detection and classification using plasma cell-free DNA methylomes SY Shen, R Singhania, G Fehringer, A Chakravarthy, MHA Roehrl, ... Nature 563 (7732), 579-583, 2018	809	2018
Unsupervised pattern discovery in human chromatin structure through genomic segmentation MM Hoffman, OJ Buske, J Wang, Z Weng, JA Bilmes, WS Noble Nature Methods 9 (5), 473, 2012	746	2012
Integrative annotation of chromatin elements from ENCODE data MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ... Nucleic Acids Res 41 (2), 827-841, 2013	633	2013
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman Information Fusion 50, 71-91, 2019	603	2019
Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014	431	2014
Transparency and reproducibility in artificial intelligence B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, ... Nature 586 (7829), E14-E16, 2020	423	2020
TRIPOD+ AI statement: updated guidance for reporting clinical prediction models that use regression or machine learning methods GS Collins, KGM Moons, P Dhiman, RD Riley, AL Beam, B Van Calster, ... bmj 385, 2024	355	2024
Metrics reloaded: recommendations for image analysis validation L Maier-Hein, A Reinke, P Godau, MD Tizabi, F Buettner, E Christodoulou, ... Nature methods 21 (2), 195-212, 2024	311*	2024
Classification and interaction in random forests D Denisko, MM Hoffman Proceedings of the National Academy of Sciences 115 (8), 1690-1692, 2018	284	2018
Common limitations of image processing metrics: A picture story A Reinke, MD Tizabi, CH Sudre, M Eisenmann, T Rädsch, M Baumgartner, ... arXiv preprint arXiv:2104.05642, 2021	214	2021
Extending reference assembly models DM Church, VA Schneider, KM Steinberg, MC Schatz, AR Quinlan, ... Genome Biol 16, 13, 2015	204	2015
GA4GH: International policies and standards for data sharing across genomic research and healthcare HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ... Cell genomics 1 (2), 2021	192	2021
Reproducibility standards for machine learning in the life sciences BJ Heil, MM Hoffman, F Markowetz, SI Lee, CS Greene, SC Hicks Nature Methods 18 (10), 1132-1135, 2021	192	2021
AANT: the Amino Acid–Nucleotide Interaction Database MM Hoffman, MA Khrapov, JC Cox, J Yao, L Tong, AD Ellington Nucleic Acids Research 32 (Database issue), D174-D181, 2004	170	2004
Umap and Bismap: quantifying genome and methylome mappability M Karimzadeh, C Ernst, A Kundaje, MM Hoffman Nucleic acids research 46 (20), e120-e120, 2018	161	2018

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