| PD-L1 expression in the Merkel cell carcinoma microenvironment: association with inflammation, Merkel cell polyomavirus, and overall survival EJ Lipson, JG Vincent, M Loyo, LT Kagohara, BS Luber, H Wang, H Xu, ... Cancer immunology research 1 (1), 54-63, 2013 | 448 | 2013 |
| Targeted sequencing reveals clonal genetic changes in the progression of early lung neoplasms and paired circulating DNA E Izumchenko, X Chang, M Brait, E Fertig, LT Kagohara, A Bedi, ... Nature communications 6 (1), 8258, 2015 | 157 | 2015 |
| The TGFβ–miR200–MIG6 pathway orchestrates the EMT-associated kinase switch that induces resistance to EGFR inhibitors E Izumchenko, X Chang, C Michailidi, L Kagohara, R Ravi, K Paz, M Brait, ... Cancer research 74 (14), 3995-4005, 2014 | 154 | 2014 |
| Epigenetic regulation of gene expression in cancer: techniques, resources and analysis LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ... Briefings in functional genomics 17 (1), 49-63, 2018 | 140 | 2018 |
| From bench to bedside: Single-cell analysis for cancer immunotherapy EF Davis-Marcisak, A Deshpande, GL Stein-O’Brien, WJ Ho, D Laheru, ... Cancer cell 39 (8), 1062-1080, 2021 | 89 | 2021 |
| Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity P Kulkarni, MK Jolly, D Jia, SM Mooney, A Bhargava, LT Kagohara, ... Proceedings of the National Academy of Sciences 114 (13), E2644-E2653, 2017 | 84 | 2017 |
| Personalized neoantigen vaccine and pembrolizumab in advanced hepatocellular carcinoma: a phase 1/2 trial M Yarchoan, EJ Gane, TU Marron, R Perales-Linares, J Yan, N Cooch, ... Nature medicine, 1-10, 2024 | 51 | 2024 |
| Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence S Zhang, L Yuan, L Danilova, G Mo, Q Zhu, A Deshpande, ATF Bell, ... Genome medicine 15 (1), 72, 2023 | 49 | 2023 |
| Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell … LT Kagohara, F Zamuner, EF Davis-Marcisak, G Sharma, M Considine, ... British journal of cancer 123 (1), 101-113, 2020 | 48 | 2020 |
| Entinostat Decreases Immune Suppression to Promote Antitumor Responses in a HER2+ Breast Tumor Microenvironment DN Sidiropoulos, CI Rafie, JK Jang, S Castanon, AG Baugh, E Gonzalez, ... Cancer immunology research 10 (5), 656-669, 2022 | 41 | 2022 |
| Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance G Stein-O’Brien, LT Kagohara, S Li, M Thakar, R Ranaweera, H Ozawa, ... Genome medicine 10, 1-22, 2018 | 41 | 2018 |
| Profiling of syngeneic mouse HCC tumor models as a framework to understand anti–PD‐1 sensitive tumor microenvironments DJ Zabransky, L Danilova, JM Leatherman, TY Lopez‐Vidal, J Sanchez, ... Hepatology 77 (5), 1566-1579, 2023 | 39 | 2023 |
| Global and gene-specific DNA methylation pattern discriminates cholecystitis from gallbladder cancer patients in Chile LT Kagohara, JL Schussel, T Subbannayya, N Sahasrabuddhe, C Lebron, ... Future oncology 11 (2), 233-249, 2015 | 31 | 2015 |
| Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces A Deshpande, M Loth, DN Sidiropoulos, S Zhang, L Yuan, ATF Bell, ... Cell systems 14 (4), 285-301. e4, 2023 | 27 | 2023 |
| Extracellular vesicles released by tumor endothelial cells spread immunosuppressive and transforming signals through various recipient cells T Lopatina, E Favaro, L Danilova, EJ Fertig, AV Favorov, LT Kagohara, ... Frontiers in Cell and Developmental Biology 8, 698, 2020 | 25 | 2020 |
| Epigenetic inactivation of VGF associated with Urothelial Cell Carcinoma and its potential as a non-invasive biomarker using urine M Hayashi, H Bernert, LT Kagohara, L Maldonado, M Brait, ... Oncotarget 5 (10), 3350, 2014 | 23 | 2014 |
| KRAS mutation status is highly homogeneous between areas of the primary tumor and the corresponding metastasis of colorectal adenocarcinomas: one less problem in patient care MP De Macedo, FM Melo, HSC Ribeiro, MC Marques, LT Kagohara, ... American journal of cancer research 7 (9), 1978, 2017 | 22 | 2017 |
| CoGAPS matrix factorization algorithm identifies transcriptional changes in AP-2alpha target genes in feedback from therapeutic inhibition of the EGFR network EJ Fertig, H Ozawa, M Thakar, JD Howard, LT Kagohara, G Krigsfeld, ... Oncotarget 7 (45), 73845, 2016 | 20 | 2016 |
| Implantation of a neoantigen-targeted hydrogel vaccine prevents recurrence of pancreatic adenocarcinoma after incomplete resection D Delitto, DJ Zabransky, F Chen, ED Thompson, JW Zimmerman, ... Oncoimmunology 10 (1), 2001159, 2021 | 15 | 2021 |
| PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration ATF Bell, JT Mitchell, AL Kiemen, M Lyman, K Fujikura, JW Lee, E Coyne, ... Cell Systems 15 (8), 753-769. e5, 2024 | 14 | 2024 |
