Prati
Andre J Faure
Andre J Faure
ALLOX
Potvrđena adresa e-pošte na allox.bio - Početna stranica
Naslov
Citirano
Citirano
Godina
3D structures of individual mammalian genomes studied by single-cell Hi-C
TJ Stevens, D Lando, S Basu, LP Atkinson, Y Cao, SF Lee, M Leeb, ...
Nature 544 (7648), 59-64, 2017
8502017
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
VC Seitan, AJ Faure, Y Zhan, RP McCord, BR Lajoie, E Ing-Simmons, ...
Genome research 23 (12), 2066-2077, 2013
3732013
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
AJ Faure, D Schmidt, S Watt, PC Schwalie, MD Wilson, H Xu, RG Ramsay, ...
Genome research 22 (11), 2163-2175, 2012
1932012
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
E Ing-Simmons, VC Seitan, AJ Faure, P Flicek, T Carroll, J Dekker, ...
Genome research 25 (4), 504-513, 2015
1832015
Mapping the energetic and allosteric landscapes of protein binding domains
AJ Faure, J Domingo, JM Schmiedel, C Hidalgo-Carcedo, G Diss, ...
Nature 604 (7904), 175-183, 2022
1662022
The mutational landscape of a prion-like domain
B Bolognesi, AJ Faure, M Seuma, JM Schmiedel, GG Tartaglia, B Lehner
Nature communications 10, 4162, 2019
1522019
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways
B Ballester, A Medina-Rivera, D Schmidt, M Gonzàlez-Porta, M Carlucci, ...
Elife 3, e02626, 2014
1182014
Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes
PC Schwalie, MC Ward, CE Cain, AJ Faure, Y Gilad, DT Odom, P Flicek
Genome biology 14, 1-15, 2013
912013
DiMSum: an error model and pipeline for analyzing deep mutational scanning data and diagnosing common experimental pathologies
AJ Faure, JM Schmiedel, P Baeza-Centurion, B Lehner
Genome Biology 21 (1), 207, 2020
752020
Systematic analysis of the determinants of gene expression noise in embryonic stem cells
AJ Faure, JM Schmiedel, B Lehner
Cell systems 5 (5), 471-484. e4, 2017
742017
The energetic and allosteric landscape for KRAS inhibition
C Weng, AJ Faure, A Escobedo, B Lehner
Nature 626 (7999), 643-652, 2024
572024
The genetic landscape for amyloid beta fibril nucleation accurately discriminates familial Alzheimer’s disease mutations
M Seuma, AJ Faure, M Badia, B Lehner, B Bolognesi
elife 10, e63364, 2021
442021
The genetic architecture of protein stability
AJ Faure, A Martí-Aranda, C Hidalgo-Carcedo, A Beltran, JM Schmiedel, ...
Nature 634 (8035), 995-1003, 2024
172024
MoCHI: neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational scanning data
AJ Faure, B Lehner
Genome Biology 25 (1), 303, 2024
82024
An extension of the Walsh-Hadamard transform to calculate and model epistasis in genetic landscapes of arbitrary shape and complexity
AJ Faure, B Lehner, V Miró Pina, C Serrano Colome, D Weghorn
PLOS Computational Biology 20 (5), e1012132, 2024
72024
The genetic architecture of protein interaction affinity and specificity
AM Bendel, AJ Faure, D Klein, K Shimada, R Lyautey, N Schiffelholz, ...
Nature Communications 15 (1), 8868, 2024
52024
Fitness landscape of a dynamic RNA structure
VWC Soo, JB Swadling, AJ Faure, T Warnecke
PLoS genetics 17 (2), e1009353, 2021
42021
Deep indel mutagenesis reveals the regulatory and modulatory architecture of alternative exon splicing
P Baeza-Centurion, B Minana, AJ Faure, M Thompson, S Bonnal, ...
bioRxiv, 2024.04. 21.590414, 2024
32024
Investigating the effect of paralogs on microarray gene-set analysis
AJ Faure, C Seoighe, NJ Mulder
BMC bioinformatics 12, 1-14, 2011
32011
The allosteric landscape of the Src kinase
A Beltran, AJ Faure, B Lehner
bioRxiv, 2024.04. 26.591297, 2024
22024
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