Philip Hugenholtz

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Donovan ParksUniversity of QueenslandPotvrđena adresa e-pošte na uq.edu.au
Gene W. TysonProfessor, Centre for Microbiome Research, Queensland University of TechnologyPotvrđena adresa e-pošte na qut.edu.au
Christian RinkeProfessor, University of Innsbruck, Austria & Honorary Associate Professor, UQ, AustraliaPotvrđena adresa e-pošte na uibk.ac.at
Maria ChuvochinaAustralian Centre for Ecogenomics, The University of QueenslandPotvrđena adresa e-pošte na uq.edu.au
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryPotvrđena adresa e-pošte na lbl.gov
Natalia IvanovaDOE Joint Genome InstitutePotvrđena adresa e-pošte na lbl.gov
Pierre-Alain ChaumeilBioinformatician, University of QueenslandPotvrđena adresa e-pošte na uq.edu.au
Linda Louise BlackallProfessor of Environmental MicrobiologyPotvrđena adresa e-pošte na unimelb.edu.au
David W WaiteSenior Scientist, Ministry for Primary IndustriesPotvrđena adresa e-pošte na mpi.govt.nz
Todd DeSantisCo-founder & Vice President, Informatics, Second Genome, Inc.Potvrđena adresa e-pošte na secondgenome.com
Susannah TringeEnvironmental Genomics and Systems Biology, Lawrence Berkeley National LaboratoryPotvrđena adresa e-pošte na lbl.gov
Aaron J MussigThe University of QueenslandPotvrđena adresa e-pošte na uq.edu.au
Gary AndersenLawrence Berkeley LaboratoryPotvrđena adresa e-pošte na lbl.gov
Ben J WoodcroftMicrobial informatics group leader, Centre for Microbiome Research, QUTPotvrđena adresa e-pošte na qut.edu.au
Tanja WoykeDOE Joint Genome InstitutePotvrđena adresa e-pošte na lbl.gov
Mark MorrisonUniversity of QueenslandPotvrđena adresa e-pošte na uq.edu.au
Michael ImelfortnonePotvrđena adresa e-pošte na uts.edu.au
Eoin BrodieDeputy Division Director, Climate and Ecosystem Sciences, Lawrence Berkeley National LabPotvrđena adresa e-pošte na lbl.gov
Daniel DaleviCentiro Solutions ABPotvrđena adresa e-pošte na centiro.com
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDPotvrđena adresa e-pošte na ucsd.edu

Prati

Philip Hugenholtz

Australian Centre for Ecogenomics, SCMB, The University of Queensland

Potvrđena adresa e-pošte na uq.edu.au - Početna stranica

microbial ecology and evolution


Naslov Poredaj po navodima Poredaj po godini Poredaj po naslovu	Citirano Citirano	Godina
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ... Applied and Environmental Microbiology 72 (7), 5069-5072, 2006	12075	2006
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson Genome Research 25 (7), 1043-1055, 2015	9424	2015
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME Journal 6 (3), 610-618, 2012	5459	2012
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks Bioinformatics 36 (6), 1925-1927, 2020	3898	2020
STAMP: statistical analysis of taxonomic and functional profiles DH Parks, GW Tyson, P Hugenholtz, RG Beiko Bioinformatics 30 (21), 3123-3124, 2014	3794	2014
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity P Hugenholtz, BM Goebel, NR Pace Journal of Bacteriology 180 (18), 4765-4774, 1998	3358	1998
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ... Nature Biotechnology 36 (10), 996-1004, 2018	3084	2018
Community structure and metabolism through reconstruction of microbial genomes from the environment GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ... Nature 428 (6978), 37-43, 2004	2915	2004
Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012	2912	2012
Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013	2489	2013
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	2058	2005
First confirmed detection of SARS-CoV-2 in untreated wastewater in Australia: a proof of concept for the wastewater surveillance of COVID-19 in the community W Ahmed, N Angel, J Edson, K Bibby, A Bivins, JW O'Brien, PM Choi, ... Science of the Total Environment 728, 138764, 2020	1933	2020
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature Biotechnology 35 (8), 725-731, 2017	1822	2017
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments T Huber, G Faulkner, P Hugenholtz Bioinformatics 20 (14), 2317-2319, 2004	1821	2004
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ... Nature Microbiology 2 (11), 1533-1542, 2017	1715	2017
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560-565, 2007	1571	2007
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates V Kunin, A Engelbrektson, H Ochman, P Hugenholtz Environmental Microbiology 12 (1), 118-123, 2010	1503	2010
Emerging pathogenic links between microbiota and the gut–lung axis KF Budden, SL Gellatly, DLA Wood, MA Cooper, M Morrison, ... Nature Reviews Microbiology 15 (1), 55-63, 2017	1407	2017
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ... Nature Biotechnology 31 (6), 533-538, 2013	1397	2013
The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature Biotechnology 26 (5), 541-547, 2008	1380	2008

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