ViWrap: A modular pipeline to identify, bin, classify, and predict viral–host relationships for viruses from metagenomes Z Zhou, C Martin, JC Kosmopoulos, K Anantharaman Imeta 2 (3), e118, 2023 | 19 | 2023 |
Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and co-evolution in pink berry marine microbial aggregates JC Kosmopoulos, DE Campbell, R Whitaker, E Wilbanks Applied and Environmental Microbiology 89 (7), 2023 | 11 | 2023 |
Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology JC Kosmopoulos, KM Klier, MV Langwig, PQ Tran, K Anantharaman Microbiome 12 (1), 195, 2024 | 7 | 2024 |
Co-inoculation with novel nodule-inhabiting bacteria reduces the benefits of legume–rhizobium symbiosis JC Kosmopoulos, RT Batstone-Doyle, KD Heath Canadian Journal of Microbiology, 2024 | 2 | 2024 |
Prophage-DB: A comprehensive database to explore diversity, distribution, and ecology of prophages E Dieppa-Colón, C Martin, JC Kosmopoulos, K Anantharaman Environmental Microbiome 20 (1), 5, 2025 | 1 | 2025 |
Bacterial growth dynamics in a rhythmic symbiosis L Yang, S Lawhorn, C Bongrand, JC Kosmopoulos, J Kuwabara, ... Molecular Biology of the Cell 35 (6), ar79, 2024 | 1 | 2024 |
To cull or kill JC Kosmopoulos, K Anantharaman Nature Ecology & Evolution 7 (11), 1752-1753, 2023 | 1 | 2023 |
V-and VL-Scores Uncover Viral Signatures and Origins of Protein Families K Anantharaman, K Zhou, J Kosmopoulos, E Dieppa, P Badciong | | 2024 |
Microbial and Viral Ecology Analysis for Metagenomic Data JC Kosmopoulos, K Anantharaman arXiv preprint arXiv:2407.08858, 2024 | | 2024 |
V-and VL-Scores Uncover Viral Signatures and Origins of Protein Families K Zhou, JC Kosmopoulos, E Dieppa Colon, PJ Badciong, ... bioRxiv, 2024.10. 24.619987, 2024 | | 2024 |
vClassifier: a toolkit for species-level classification of prokaryotic viruses K Zhou, JC Kosmopoulos, K Anantharaman bioRxiv, 2024.05. 28.596318, 2024 | | 2024 |