Prati
Maksim Kouza
Naslov
Citirano
Citirano
Godina
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking
M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ...
Methods 93, 72-83, 2016
1792016
Effect of finite size on cooperativity and rates of protein folding
M Kouza, MS Li, EP O'Brien, CK Hu, D Thirumalai
The Journal of Physical Chemistry A 110 (2), 671-676, 2006
742006
The GOR method of protein secondary structure prediction and its application as a protein aggregation prediction tool
M Kouza, E Faraggi, A Kolinski, A Kloczkowski
Prediction of protein secondary structure, 7-24, 2017
702017
Modeling of protein structural flexibility and large-scale dynamics: Coarse-grained simulations and elastic network models
S Kmiecik, M Kouza, AE Badaczewska-Dawid, A Kloczkowski, A Kolinski
International journal of molecular sciences 19 (11), 3496, 2018
642018
Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin
MS Li, M Kouza, CK Hu
Biophysical journal 92 (2), 547-561, 2007
582007
Relationship between population of the fibril-prone conformation in the monomeric state and oligomer formation times of peptides: Insights from all-atom simulations
HB Nam, M Kouza, H Zung, MS Li
The Journal of chemical physics 132 (16), 2010
472010
New force replica exchange method and protein folding pathways probed by force-clamp technique
M Kouza, CK Hu, MS Li
The Journal of chemical physics 128 (4), 2008
392008
Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible model
M Kouza, A Banerji, A Kolinski, IA Buhimschi, A Kloczkowski
Physical Chemistry Chemical Physics 19 (4), 2990-2999, 2017
372017
Dependence of protein mechanical unfolding pathways on pulling speeds
MS Li, M Kouza
The Journal of chemical physics 130 (14), 2009
372009
Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulations
G Arad-Haase, SG Chuartzman, S Dagan, R Nevo, M Kouza, BK Mai, ...
Biophysical journal 99 (1), 238-247, 2010
362010
Folding of the protein domain hbSBD
M Kouza, CF Chang, S Hayryan, T Yu, MS Li, T Huang, CK Hu
Biophysical journal 89 (5), 3353-3361, 2005
362005
From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A
S Kmiecik, D Gront, M Kouza, A Kolinski
The Journal of Physical Chemistry B 116 (23), 7026-7032, 2012
342012
Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics
J Wabik, S Kmiecik, D Gront, M Kouza, A Koliński
International Journal of Molecular Sciences 14 (5), 9893-9905, 2013
302013
Protein mechanical unfolding: Importance of non-native interactions
M Kouza, CK Hu, H Zung, MS Li
The Journal of chemical physics 131 (21), 2009
302009
Folding simulations of the A and B domains of protein G
M Kouza, UHE Hansmann
The Journal of Physical Chemistry B 116 (23), 6645-6653, 2012
292012
Role of resultant dipole moment in mechanical dissociation of biological complexes
M Kouza, A Banerji, A Kolinski, I Buhimschi, A Kloczkowski
Molecules 23 (8), 1995, 2018
252018
Velocity scaling for optimizing replica exchange molecular dynamics
M Kouza, UHE Hansmann
The Journal of Chemical Physics 134 (4), 2011
252011
A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain
M Kouza, CK Hu, MS Li, A Kolinski
The Journal of chemical physics 139 (6), 2013
232013
Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational study
M Kouza, NT Co, MS Li, S Kmiecik, A Kolinski, A Kloczkowski, ...
The Journal of Chemical Physics 148 (21), 2018
222018
Preformed template fluctuations promote fibril formation: insights from lattice and all-atom models
M Kouza, NT Co, PH Nguyen, A Kolinski, MS Li
The Journal of Chemical Physics 142 (14), 2015
172015
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