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| Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes G Lomberk, Y Blum, R Nicolle, A Nair, KS Gaonkar, L Marisa, A Mathison, ... Nature communications 9 (1), 1978, 2018 | 247 | 2018 |
| Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design JL Rokita, KS Rathi, MF Cardenas, KA Upton, J Jayaseelan, KL Cross, ... Cell reports 29 (6), 1675-1689. e9, 2019 | 179 | 2019 |
| CARM1-expressing ovarian cancer depends on the histone methyltransferase EZH2 activity S Karakashev, H Zhu, S Wu, Y Yokoyama, BG Bitler, PH Park, JH Lee, ... Nature communications 9 (1), 631, 2018 | 89 | 2018 |
| Recurrent MSCE116K mutations in ALK-negative anaplastic large cell lymphoma RA Luchtel, MT Zimmermann, G Hu, S Dasari, M Jiang, N Oishi, ... Blood, The Journal of the American Society of Hematology 133 (26), 2776-2789, 2019 | 71 | 2019 |
| OpenPBTA: the open pediatric brain tumor atlas JA Shapiro, KS Gaonkar, SJ Spielman, CL Savonen, CJ Bethell, R Jin, ... Cell genomics 3 (7), 2023 | 41* | 2023 |
| Upfront biology-guided therapy in diffuse intrinsic pontine glioma: therapeutic, molecular, and biomarker outcomes from PNOC003 C Kline, P Jain, L Kilburn, ER Bonner, N Gupta, JR Crawford, A Banerjee, ... Clinical Cancer Research 28 (18), 3965-3978, 2022 | 41 | 2022 |
| Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ... Cell reports 34 (13), 2021 | 37 | 2021 |
| Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ... Neuro-oncology 22 (1), 163-165, 2020 | 34 | 2020 |
| A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease GR Oliver, X Tang, LE Schultz-Rogers, N Vidal-Folch, WG Jenkinson, ... PLoS One 14 (10), e0223337, 2019 | 30 | 2019 |
| Postnatal ontogenesis of the islet circadian clock plays a contributory role in β-cell maturation process K Rakshit, J Qian, KS Gaonkar, S Dhawan, CS Colwell, AV Matveyenko Diabetes 67 (5), 911-922, 2018 | 30 | 2018 |
| HDAC3 restrains CD8-lineage genes to maintain a bi-potential state in CD4+CD8+ thymocytes for CD4-lineage commitment RL Philips, JH Lee, K Gaonkar, P Chanana, JY Chung, ... Elife 8, e43821, 2019 | 26 | 2019 |
| Myosin-1E interacts with FAK proline-rich region 1 to induce fibronectin-type matrix JB Heim, EJ Squirewell, A Neu, G Zocher, S Sominidi-Damodaran, ... Proceedings of the National Academy of Sciences 114 (15), 3933-3938, 2017 | 26 | 2017 |
| RET receptor expression and interaction with TRK receptors in neuroblastomas LH Tetri, V Kolla, RL Golden, R Iyer, JL Croucher, JH Choi, SP Macfarland, ... Oncology Reports 44 (1), 263-272, 2020 | 17 | 2020 |
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| ALT in Pediatric High-Grade Gliomas Can Occur without ATRX Mutation and is Enriched in Patients with Pathogenic Germline MMR Variants JL Stundon, H Ijaz, KS Gaonkar, RS Kaufman, R Jin, A Karras, Z Vaksman, ... bioRxiv, 2022.08. 05.502870, 2022 | 11 | 2022 |
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| annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions KS Gaonkar, F Marini, KS Rathi, P Jain, Y Zhu, NA Chimicles, MA Brown, ... BMC bioinformatics 21, 1-21, 2020 | 10 | 2020 |
| Alternative lengthening of telomeres (ALT) in pediatric high-grade gliomas can occur without ATRX mutation and is enriched in patients with pathogenic germline mismatch repair … JL Stundon, H Ijaz, KS Gaonkar, RS Kaufman, R Jin, A Karras, Z Vaksman, ... Neuro-oncology 25 (7), 1331-1342, 2023 | 8 | 2023 |
| Identification of factors associated with duplicate rate in ChIP-seq data S Tian, S Peng, M Kalmbach, KS Gaonkar, A Bhagwate, W Ding, ... PloS one 14 (4), e0214723, 2019 | 8 | 2019 |
