| ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets M Brozovic, C Dantec, J Dardaillon, D Dauga, E Faure, M Gineste, ... Nucleic acids research 46 (D1), D718-D725, 2018 | 112 | 2018 |
| Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians A Stolfi, EK Lowe, C Racioppi, F Ristoratore, CT Brown, BJ Swalla, ... elife 3, e03728, 2014 | 83 | 2014 |
| ANISEED 2015: a digital framework for the comparative developmental biology of ascidians M Brozovic, C Martin, C Dantec, D Dauga, M Mendez, P Simion, ... Nucleic acids research 44 (D1), D808-D818, 2016 | 79 | 2016 |
| Opsin evolution in the Ambulacraria S D'Aniello, J Delroisse, A Valero-Gracia, EK Lowe, M Byrne, JT Cannon, ... Marine genomics 24, 177-183, 2015 | 53 | 2015 |
| Extraocular vision in a brittle star is mediated by chromatophore movement in response to ambient light L Sumner-Rooney, JD Kirwan, E Lowe, E Ullrich-Lüter Current Biology 30 (2), 319-327. e4, 2020 | 38 | 2020 |
| Development of a goosegrass (Eleusine indica) draft genome and application to weed science research H Zhang, N Hall, LR Goertzen, B Bi, CY Chen, E Peatman, EK Lowe, ... Pest management science 75 (10), 2776-2784, 2019 | 31 | 2019 |
| Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes F Marlétaz, A Couloux, J Poulain, K Labadie, C Da Silva, S Mangenot, ... Cell Genomics 3 (4), 2023 | 26 | 2023 |
| Regulation of Neurogenesis by FGF Signaling and Neurogenin in the Invertebrate Chordate Ciona K Kim, S Gibboney, F Razy-Krajka, EK Lowe, W Wang, A Stolfi Frontiers in Cell and Developmental Biology 8, 477, 2020 | 24 | 2020 |
| Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity EK Lowe, C Cuomo, D Voronov, MI Arnone Methods in cell biology 151, 115-126, 2019 | 24 | 2019 |
| Developmental system drift in motor ganglion patterning between distantly related tunicates EK Lowe, A Stolfi EvoDevo 9, 1-15, 2018 | 20 | 2018 |
| Complete plastid genome sequence of goosegrass (Eleusine indica) and comparison with other Poaceae H Zhang, N Hall, JS McElroy, EK Lowe, LR Goertzen Gene 600, 36-43, 2017 | 20 | 2017 |
| Evolutionary loss of melanogenesis in the tunicate Molgula occulta C Racioppi, MC Valoroso, U Coppola, EK Lowe, CT Brown, BJ Swalla, ... EvoDevo 8, 1-11, 2017 | 18 | 2017 |
| Evaluating a lightweight transcriptome assembly pipeline on two closely related ascidian species EK Lowe, BJ Swalla, CT Brown PeerJ PrePrints, 2014 | 17 | 2014 |
| The crowns have eyes: multiple opsins found in the eyes of the crown-of-thorns starfish Acanthaster planci EK Lowe, AL Garm, E Ullrich-Lüter, C Cuomo, MI Arnone BMC Evolutionary Biology 18, 1-12, 2018 | 16 | 2018 |
| Effector gene expression underlying neuron subtype-specific traits in the Motor Ganglion of Ciona S Gibboney, J Orvis, K Kim, CJ Johnson, P Martinez-Feduchi, EK Lowe, ... Developmental Biology 458 (1), 52-63, 2020 | 15 | 2020 |
| Omics approaches to study gene regulatory networks for development in echinoderms EK Lowe, C Cuomo, MI Arnone Briefings in Functional Genomics 16 (5), 299-308, 2017 | 15 | 2017 |
| The degenerate tale of ascidian tails ACA Fodor, MM Powers, K Andrykovich, J Liu, EK Lowe, CT Brown, ... Integrative and comparative biology 61 (2), 358-369, 2021 | 13 | 2021 |
| The complete mitochondrial genome of the common pandora Pagellus erythrinus (Perciformes: Sparidae) M Ceruso, C Mascolo, EK Lowe, G Palma, A Anastasio, P Sordino, ... Mitochondrial DNA Part B 3 (2), 624-625, 2018 | 12 | 2018 |
| Finding Candida auris in public metagenomic repositories JE Mario-Vasquez, UR Bagal, E Lowe, A Morgulis, J Phan, DJ Sexton, ... Plos one 19 (1), e0291406, 2024 | 8 | 2024 |
| A Differential Transcriptomic Approach to Compare Target Genes of Homologous Transcription Factors in Echinoderm Species EK Lowe, C Cuomo, MI Arnone Dynamics of Mathematical Models in Biology: Bringing Mathematics to Life, 55-63, 2016 | 6 | 2016 |