| MUSTANG: a multiple structural alignment algorithm AS Konagurthu, JC Whisstock, PJ Stuckey, AM Lesk Proteins: Structure, Function, and Bioinformatics 64 (3), 559-574, 2006 | 837 | 2006 |
| Minimum message length inference of secondary structure from protein coordinate data AS Konagurthu, AM Lesk, L Allison Bioinformatics 28 (12), i97-i105, 2012 | 59 | 2012 |
| On the origin of distribution patterns of motifs in biological networks AS Konagurthu, AM Lesk BMC Systems Biology 2, 1-8, 2008 | 54 | 2008 |
| MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography AS Konagurthu, CF Reboul, JW Schmidberger, JA Irving, AM Lesk, ... PLoS One 5 (4), e10048, 2010 | 52 | 2010 |
| Structural search and retrieval using a tableau representation of protein folding patterns AS Konagurthu, PJ Stuckey, AM Lesk Bioinformatics 24 (5), 645-651, 2008 | 33 | 2008 |
| Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs K Mahmood, GI Webb, J Song, JC Whisstock, AS Konagurthu Nucleic acids research 40 (6), e44-e44, 2012 | 30 | 2012 |
| Statistical inference of protein structural alignments using information and compression JH Collier, L Allison, AM Lesk, PJ Stuckey, M Garcia de la Banda, ... Bioinformatics 33 (7), 1005-1013, 2017 | 27 | 2017 |
| Progressive multiple alignment using sequence triplet optimizations and three-residue exchange costs AS Konagurthu, J Whisstock, PJ Stuckey Journal of Bioinformatics and Computational Biology 2 (04), 719-745, 2004 | 22 | 2004 |
| A fast indexing approach for protein structure comparison L Zhang, J Bailey, AS Konagurthu, K Ramamohanarao BMC bioinformatics 11, 1-9, 2010 | 20 | 2010 |
| Single and multiple input modules in regulatory networks AS Konagurthu, AM Lesk Proteins: Structure, Function, and Bioinformatics 73 (2), 320-324, 2008 | 17 | 2008 |
| A new statistical framework to assess structural alignment quality using information compression JH Collier, L Allison, AM Lesk, M Garcia de la Banda, AS Konagurthu Bioinformatics 30 (17), i512-i518, 2014 | 16 | 2014 |
| EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes K Mahmood, AS Konagurthu, J Song, AM Buckle, GI Webb, JC Whisstock Bioinformatics 26 (17), 2076-2084, 2010 | 14 | 2010 |
| Piecewise linear approximation of protein structures using the principle of minimum message length AS Konagurthu, L Allison, PJ Stuckey, AM Lesk Bioinformatics 27 (13), i43-i51, 2011 | 13 | 2011 |
| Universal architectural concepts underlying protein folding patterns AS Konagurthu, R Subramanian, L Allison, D Abramson, PJ Stuckey, ... Frontiers in Molecular Biosciences 7, 612920, 2021 | 12 | 2021 |
| An information measure for comparing top k lists JH Collier, AS Konagurthu 2014 IEEE 10th international conference on e-science 1, 127-134, 2014 | 12* | 2014 |
| Optimal sum-of-pairs multiple sequence alignment using incremental Carrillo and Lipman bounds AS Konagurthu, PJ Stuckey Journal of Computational Biology 13 (3), 668-685, 2006 | 12 | 2006 |
| On the reliability and the limits of inference of amino acid sequence alignments S Rajapaksa, D Sumanaweera, AM Lesk, L Allison, PJ Stuckey, ... Bioinformatics 38 (Supplement_1), i255-i263, 2022 | 11 | 2022 |
| Sequence and structure alignments in post-AlphaFold era S Rajapaksa, AS Konagurthu, AM Lesk Current Opinion in Structural Biology 79, 102539, 2023 | 10 | 2023 |
| Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors D Sumanaweera, L Allison, AS Konagurthu Bioinformatics 35 (14), i360-i369, 2019 | 10 | 2019 |
| Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank JH Collier, AM Lesk, M Garcia de la Banda, AS Konagurthu Nucleic acids research 40 (W1), W334-W339, 2012 | 10 | 2012 |
