Validation of an expanded carrier screen that optimizes sensitivity via full-exon sequencing and panel-wide copy number variant identification GJ Hogan, VS Vysotskaia, KA Beauchamp, S Seisenberger, PV Grauman, ... Clinical chemistry 64 (7), 1063-1073, 2018 | 73 | 2018 |
Reaction path optimization with holonomic constraints and kinetic energy potentials JB Brokaw, KR Haas, JW Chu Journal of Chemical Theory and Computation 5 (8), 2050-2061, 2009 | 41 | 2009 |
Expectation-maximization of the potential of mean force and diffusion coefficient in Langevin dynamics from single molecule FRET data photon by photon KR Haas, H Yang, JW Chu The Journal of Physical Chemistry B 117 (49), 15591-15605, 2013 | 37 | 2013 |
High-throughput fetal fraction amplification increases analytical performance of noninvasive prenatal screening NC Welker, AK Lee, RAS Kjolby, HY Wan, MR Theilmann, D Jeon, ... Genetics in Medicine 23 (3), 443-450, 2021 | 32 | 2021 |
Development and validation of a 36-gene sequencing assay for hereditary cancer risk assessment VS Vysotskaia, GJ Hogan, GM Gould, X Wang, AD Robertson, KR Haas, ... PeerJ 5, e3046, 2017 | 27 | 2017 |
Trajectory entropy of continuous stochastic processes at equilibrium KR Haas, H Yang, JW Chu The Journal of Physical Chemistry Letters 5 (6), 999-1003, 2014 | 24 | 2014 |
Fisher information metric for the Langevin equation and least informative models of continuous stochastic dynamics KR Haas, H Yang, JW Chu The Journal of chemical physics 139 (12), 2013 | 22 | 2013 |
Decomposition of energy and free energy changes by following the flow of work along reaction path K Haas, JW Chu The Journal of chemical physics 131 (14), 2009 | 22 | 2009 |
Software-assisted manual review of clinical next-generation sequencing data: an alternative to routine Sanger sequencing confirmation with equivalent results in> 15,000 … D Muzzey, S Kash, JI Johnson, LM Melroy, P Kaleta, KA Pierce, K Ready, ... The Journal of Molecular Diagnostics 21 (2), 296-306, 2019 | 18 | 2019 |
Analysis of trajectory entropy for continuous stochastic processes at equilibrium KR Haas, H Yang, JW Chu The Journal of Physical Chemistry B 118 (28), 8099-8107, 2014 | 18 | 2014 |
Next-generation sequencing assay accurately determines carrier status for spinal muscular atrophy X Wang, HY Wan, CB Oyolu ASHG annual meeting, 2015 | 2 | 2015 |
Copy number variant caller X Wang, PV GRAUMAN US Patent App. 17/554,721, 2022 | 1 | 2022 |
Software-assisted manual review of clinical NGS data: an alternative to routine Sanger sequencing confirmation with equivalent results in> 15,000 hereditary cancer screens D Muzzey, S Kash, JI Johnson, LM Melroy, P Kaleta, KA Pierce, K Ready, ... bioRxiv, 305011, 2018 | 1 | 2018 |
Development and validation of an expanded carrier screen that optimizes sensitivity via full-exon sequencing and panel-wide copy-number-variant identification GJ Hogan, VS Vysotskaia, S Seisenberger, PV Grauman, KA Beauchamp, ... bioRxiv, 178350, 2017 | 1 | 2017 |
Fetal fraction amplification within prenatal cfDNA screening enables detection of genome-wide copy-number variants at enhanced resolution A Acevedo, O Teng, HG LaBreche, A Nguyen, L Jazo, SH Hong, J Suk, ... Genetics in Medicine 27 (1), 101269, 2025 | | 2025 |
Noninvasive prenatal screening using dynamic iterative depth optimization with depth-scaled variance determination DE Muzzey, JR Tratner, KM D'Auria US Patent 12,020,779, 2024 | | 2024 |
Evaluation and improvement of genetic screening tests using receiver operating characteristic curves KA Beauchamp US Patent App. 18/592,076, 2024 | | 2024 |
Bayesian sex caller A Lee, K Haas, K D'auria US Patent App. 18/020,416, 2024 | | 2024 |
Deep learning based variant calling using machine learning S Hong, K Beauchamp, K Haas US Patent App. 17/039,826, 2022 | | 2022 |
Fetal fraction amplification within NIPS enables detection of clinically relevant genome-wide copy-number-variants to 1Mb resolution A Acevedo, S Cox, H LaBreche, M Alfaro, S Pierson, S Hancock, K Moyer, ... American Journal of Obstetrics & Gynecology 226 (1), S433, 2022 | | 2022 |