Modeling and simulation of molecular biology systems using petri nets: modeling goals of various approaches S Hardy, PN Robillard Journal of bioinformatics and computational biology 2 (04), 619-637, 2004 | 187 | 2004 |
Interconnected network motifs control podocyte morphology and kidney function EU Azeloglu, SV Hardy, NJ Eungdamrong, Y Chen, G Jayaraman, ... Science signaling 7 (311), ra12-ra12, 2014 | 71 | 2014 |
Petri net-based method for the analysis of the dynamics of signal propagation in signaling pathways S Hardy, PN Robillard Bioinformatics 24 (2), 209-217, 2008 | 66 | 2008 |
Phenomenological and molecular-level Petri net modeling and simulation of long-term potentiation S Hardy, PN Robillard Biosystems 82 (1), 26-38, 2005 | 14 | 2005 |
Genome-Scale Metabolic Reconstruction and in Silico Perturbation Analysis of the Polar Diatom Fragilariopsis cylindrus Predicts High Metabolic Robustness M Lavoie, B Saint-Béat, J Strauss, S Guérin, A Allard, S V. Hardy, ... Biology 9 (2), 30, 2020 | 12 | 2020 |
Analysis of dynamical models of signaling networks with petri nets and dynamic graphs S Hardy, R Iyengar Modeling in Systems Biology: The Petri Net Approach, 225-251, 2011 | 7 | 2011 |
Dictyostelium discoideum: Aggregation and synchronisation of amoebas in time and space M Beccuti, MA Blätke, M Falk, S Hardy, M Heiner, C Maus, C Nähring, ... Dagstuhl Seminar 14481" Multiscale Spatial Computational Systems Biology …, 2015 | 4 | 2015 |
Visualization of the simulation data of biochemical network models: a painted Petri net approach S Hardy, PN Robillard Proceedings of the 2007 Summer Computer Simulation Conference, 802-808, 2007 | 4 | 2007 |
Deciphering heterogeneous populations of migrating cells based on the computational assessment of their dynamic properties A Ferreira, C Bressan, SV Hardy, A Saghatelyan Stem Cell Reports 17 (4), 911-923, 2022 | 3 | 2022 |
A functional representation of the simulation data of biochemical models based on molecular activity S HARDY, PN ROBILLARD WSEAS Transactions on Biology and Biomedicine 4 (11), 161-171, 2007 | 3 | 2007 |
Analysis of the Signal Transduction Dynamics Regulating mTOR with Mathematical Modeling, Petri Nets and Dynamic Graphs. SV Hardy, MP Fortin PNSE@ Petri Nets 2016, 347-361, 2016 | 2 | 2016 |
Painted Petri net and functional abstraction to visualize dynamic modeling S Hardy, PN Robillard | 2 | 2006 |
Distinct forms of structural plasticity of adult-born interneuron spines in the mouse olfactory bulb induced by different odor learning paradigms A Ferreira, VS Constantinescu, S Malvaut, A Saghatelyan, SV Hardy Communications Biology 7 (1), 420, 2024 | 1 | 2024 |
A hybrid Petri net model of the Akt-Wnt-mTOR-p70S6K signalling network in neurons MP Fortin, SV Hardy Fundamenta Informaticae 160 (1-2), 1-25, 2018 | 1 | 2018 |
Counting Hidden Neural Networks. A Richard, P Desrosiers, S Hardy, N Doyon J. Integer Seq. 19 (4), 16.4.7, 2016 | 1 | 2016 |
Modélisation et simulation de systèmes biologiques à l'aide de réseaux de Pétri S Hardy École Polytechnique de Montréal, 2004 | 1 | 2004 |
Modélisation et simulation de processus de biologie moléculaire basée sur les réseaux de Pétri: une revue de littérature S Hardy, PN Robillard École Polytechnique de Montréal, 2003 | 1 | 2003 |
An algorithm for the transformation of the Petri net models of biological signaling networks into influence graphs S Gamache-Poirier, A Souvane, W Leclerc, C Villeneuve, SV Hardy bioRxiv, 2025.01. 06.631612, 2025 | | 2025 |
NeuroTorch: A Python library for neuroscience-oriented machine learning J Gince, A Drouin, P Desrosiers, SV Hardy bioRxiv, 2024.12. 29.630683, 2024 | | 2024 |
Distinct forms of structural plasticity of adult-born interneuron spines induced by different odor learning paradigms A Ferreira, VS Constantinescu, S Malvaut, A Saghatelyan, SV Hardy bioRxiv, 2023.07. 20.549882, 2023 | | 2023 |