| Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder K Dong, S Zhang Nature communications 13 (1), 1739, 2022 | 394 | 2022 |
| Integrating spatial transcriptomics data across different conditions, technologies and developmental stages X Zhou^, K Dong^, S Zhang Nature Computational Science, 1-13, 2023 | 56 | 2023 |
| STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning C Zhang, K Dong, K Aihara, L Chen, S Zhang Nucleic Acids Research 51 (20), e103-e103, 2023 | 26 | 2023 |
| Spatiotemporal transcriptomic atlas reveals the dynamic characteristics and key regulators of planarian regeneration G Cui^, K Dong^, JY Zhou^, S Li^, Y Wu^, Q Han, B Yao, Q Shen, YL Zhao, ... Nature Communications 14 (1), 3205, 2023 | 12 | 2023 |
| Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data K Dong, S Zhang Briefings in Bioinformatics 22 (3), bbaa120, 2021 | 12 | 2021 |
| Deciphering the spatial modular patterns of tissues by integrating spatial and single-cell transcriptomic data X Shan^, J Chen^, K Dong^, W Zhou, S Zhang Journal of Computational Biology 29 (7), 650-663, 2022 | 9 | 2022 |
| Network diffusion for scalable embedding of massive single-cell ATAC-seq data K Dong, S Zhang Science Bulletin (2021), 66(22): 2271-2276. doi: https://doi.org/10.1016/j …, 2021 | 9 | 2021 |
| High-density generation of spatial transcriptomics with STAGE S Li, K Gai, K Dong, Y Zhang, S Zhang Nucleic Acids Research 52 (9), 4843-4856, 2024 | 6 | 2024 |
| SmartGate is a spatial metabolomics tool for resolving tissue structures K Xiao^, Y Wang^, K Dong^, S Zhang Briefings in Bioinformatics 24 (3), bbad141, 2023 | 4 | 2023 |
| High-precision cell-type mapping and annotation of single-cell spatial transcriptomics with STAMapper Q Shen, K Dong, S Zhang, S Zhang bioRxiv, 2025.01. 08.631859, 2025 | | 2025 |
| Single-nucleus multi-omics analyses reveal cellular and molecular innovations in the anterior cingulate cortex during primate evolution J Yuan, K Dong, H Wu, X Zeng, X Liu, Y Liu, J Dai, J Yin, Y Chen, Y Guo, ... Cell Genomics 4 (12), 2024 | | 2024 |
| Uncovering topologically associating domains from three-dimensional genome maps with TADGATE D Dang, SW Zhang, K Dong, R Duan, S Zhang bioRxiv, 2024.06. 12.598668, 2024 | | 2024 |
Shihua ZhangProfessor of Academy of Mathematics and Systems Science, Chinese Academy of SciencesEmail yang diverifikasi di amss.ac.cn
