| Random access DNA memory using Boolean search in an archival file storage system JL Banal, TR Shepherd, J Berleant, H Huang, M Reyes, CM Ackerman, ... Nature materials 20 (9), 1272-1280, 2021 | 118 | 2021 |
| Compiler-aided systematic construction of large-scale DNA strand displacement circuits using unpurified components AJ Thubagere, C Thachuk, J Berleant, RF Johnson, DA Ardelean, ... Nature Communications 8 (1), 14373, 2017 | 98 | 2017 |
| Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems J Berleant, C Berlind, S Badelt, F Dannenberg, J Schaeffer, E Winfree Journal of the Royal Society Interface 15 (149), 20180107, 2018 | 21 | 2018 |
| Reappraisal of incentives ameliorates choking under pressure and is correlated with changes in the neural representations of incentives S Dunne, VS Chib, J Berleant, JP O’Doherty Social Cognitive and Affective Neuroscience 14 (1), 13-22, 2019 | 16 | 2019 |
| A Bayesian framework for high-throughput T cell receptor pairing PV Holec, J Berleant, M Bathe, ME Birnbaum Bioinformatics 35 (8), 1318-1325, 2019 | 9 | 2019 |
| Automated methods for scalable, parallelized enzymatic biopolymer synthesis and modification using microfluidic devices J Banal, JD Berleant, T Shepherd, M Bathe US Patent 11,851,651, 2023 | 4 | 2023 |
| Isometric Hamming embeddings of weighted graphs J Berleant, K Sheridan, A Condon, VV Williams, M Bathe Discrete Applied Mathematics 332, 119-128, 2023 | 4 | 2023 |
| Rational design of DNA sequences with non-orthogonal binding interactions JD Berleant 29th International Conference on DNA Computing and Molecular Programming …, 2023 | 3 | 2023 |
| Factorization and pseudofactorization of weighted graphs K Sheridan, J Berleant, M Bathe, A Condon, VV Williams Discrete Applied Mathematics 337, 81-105, 2023 | 2 | 2023 |
| 29th International Conference on DNA Computing and Molecular Programming (DNA 29) A Shalaby, C Thachuk, D Woods, F Becker, S Heydarshahi, A Condon, ... Schloss Dagstuhl-Leibniz-Zentrum für Informatik GmbH, 2023 | 1 | 2023 |
| DNA sequence design of non-orthogonal binding networks, and application to DNA data storage JD Berleant Massachusetts Institute of Technology, 2023 | 1 | 2023 |
| Sequence-controlled polymer storage JL Banal, M Bathe, J Berleant, CE Leiserson, TB Schardl US Patent App. 17/836,726, 2022 | 1 | 2022 |
| Enabling global-scale nucleic acid repositories through versatile, scalable biochemical selection from room-temperature archives JD Berleant, JL Banal, DK Rao, M Bathe medRxiv, 2024.04. 12.24305660, 2024 | | 2024 |
| Scalable search of massively pooled nucleic acid samples enabled by a molecular database query language JD Berleant, JL Banal, DK Rao, M Bathe medRxiv, 2024 | | 2024 |
| Automated methods for scalable, parallelized enzymatic biopolymer synthesis and modification using microfluidic devices J Banal, JD Berleant, T Shepherd, M Bathe US Patent App. 18/506,027, 2024 | | 2024 |
| LIPIcs, Volume 276, DNA 29, Complete Volume}} HL Chen, CG Evans, A Shalaby, C Thachuk, D Woods, F Becker, ... 29th International Conference on DNA Computing and Molecular Programming …, 2023 | | 2023 |
| Automated Sequence-Level Analysis of Kinetics and Thermodynamics for Domain-Level DNA Strand-Displacement Systems: Supplementary Information (Technical Appendix) J Berleant, C Berlind, S Badelt, F Dannenberg, J Schaeffer, E Winfree | | |
| Evolutionary Modeling Using State-Conditioned L-Systems J Berleant, D Ashlock, D Berleant, LR LRCH | | |
