| Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis TS Adams, JC Schupp, S Poli, EA Ayaub, N Neumark, F Ahangari, ... Science advances 6 (28), eaba1983, 2020 | 1060 | 2020 |
| Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis T Tsukui, KH Sun, JB Wetter, JR Wilson-Kanamori, LA Hazelwood, ... Nature communications 11 (1), 1920, 2020 | 522 | 2020 |
| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 340 | 2021 |
| Integrated single-cell atlas of endothelial cells of the human lung JC Schupp, TS Adams, C Cosme Jr, MSB Raredon, Y Yuan, N Omote, ... Circulation 144 (4), 286-302, 2021 | 298 | 2021 |
| Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and … C Muus, MD Luecken, G Eraslan, A Waghray, G Heimberg, L Sikkema, ... BioRxiv, 2020.04. 19.049254, 2020 | 264 | 2020 |
| Single-cell connectomic analysis of adult mammalian lungs MSB Raredon, TS Adams, Y Suhail, JC Schupp, S Poli, N Neumark, ... Science advances 5 (12), eaaw3851, 2019 | 206 | 2019 |
| Characterization of the COPD alveolar niche using single-cell RNA sequencing M Sauler, JE McDonough, TS Adams, N Kothapalli, T Barnthaler, ... Nature communications 13 (1), 494, 2022 | 145 | 2022 |
| Computation and visualization of cell–cell signaling topologies in single-cell systems data using Connectome MSB Raredon, J Yang, J Garritano, M Wang, D Kushnir, JC Schupp, ... Scientific Reports 12 (1), 4187, 2022 | 107 | 2022 |
| Airway basal cells show a dedifferentiated KRT17highPhenotype and promote fibrosis in idiopathic pulmonary fibrosis B Jaeger, JC Schupp, L Plappert, O Terwolbeck, N Artysh, G Kayser, ... Nature communications 13 (1), 5637, 2022 | 83 | 2022 |
| Single-cell transcriptional archetypes of airway inflammation in cystic fibrosis JC Schupp, S Khanal, JL Gomez, M Sauler, TS Adams, GL Chupp, X Yan, ... American journal of respiratory and critical care medicine 202 (10), 1419-1429, 2020 | 74 | 2020 |
| Saracatinib, a selective src kinase inhibitor, blocks fibrotic responses in preclinical models of pulmonary fibrosis F Ahangari, C Becker, DG Foster, M Chioccioli, M Nelson, K Beke, ... American Journal of Respiratory and Critical Care Medicine 206 (12), 1463-1479, 2022 | 59 | 2022 |
| Microenvironmental sensing by fibroblasts controls macrophage population size X Zhou, RA Franklin, M Adler, TS Carter, E Condiff, TS Adams, SD Pope, ... Proceedings of the National Academy of Sciences 119 (32), e2205360119, 2022 | 56 | 2022 |
| Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity LT Bui, NI Winters, MI Chung, C Joseph, AJ Gutierrez, AC Habermann, ... Nature communications 12 (1), 4314, 2021 | 49 | 2021 |
| Platform effects on regeneration by pulmonary basal cells as evaluated by single-cell RNA sequencing AM Greaney, TS Adams, MSB Raredon, E Gubbins, JC Schupp, ... Cell reports 30 (12), 4250-4265. e6, 2020 | 45 | 2020 |
| Transcriptomics of bronchoalveolar lavage cells identifies new molecular endotypes of sarcoidosis M Vukmirovic, X Yan, KF Gibson, M Gulati, JC Schupp, G DeIuliis, ... European Respiratory Journal 58 (6), 2021 | 44 | 2021 |
| CD38 mediates lung fibrosis by promoting alveolar epithelial cell aging H Cui, N Xie, S Banerjee, T Dey, RM Liu, VB Antony, YY Sanders, ... American Journal of Respiratory and Critical Care Medicine 206 (4), 459-475, 2022 | 41 | 2022 |
| microRNA-33 deficiency in macrophages enhances autophagy, improves mitochondrial homeostasis, and protects against lung fibrosis F Ahangari, NL Price, S Malik, M Chioccioli, T Bärnthaler, TS Adams, ... JCI insight 8 (4), 2023 | 36 | 2023 |
| Distinct roles of KLF4 in mesenchymal cell subtypes during lung fibrogenesis RR Chandran, Y Xie, E Gallardo-Vara, T Adams, R Garcia-Milian, I Kabir, ... Nature Communications 12 (1), 7179, 2021 | 35 | 2021 |
| Single cell RNA-seq and mass cytometry reveals a novel and a targetable population of macrophages in idiopathic pulmonary fibrosis EA Ayaub, S Poli, J Ng, T Adams, J Schupp, L Quesada-Arias, F Poli, ... BioRxiv, 2021.01. 04.425268, 2021 | 31 | 2021 |
| Emergence of division of labor in tissues through cell interactions and spatial cues M Adler, N Moriel, A Goeva, I Avraham-Davidi, S Mages, TS Adams, ... Cell Reports 42 (5), 2023 | 27 | 2023 |
