| The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ... science 291 (5507), 1304-1351, 2001 | 20308 | 2001 |
| Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals S Hannenhalli, PA Pevzner Journal of the ACM (JACM) 46 (1), 1-27, 1999 | 1248 | 1999 |
| The evolution of Fox genes and their role in development and disease S Hannenhalli, KH Kaestner Nature Reviews Genetics 10 (4), 233-240, 2009 | 785 | 2009 |
| Genome-wide analysis of retroviral DNA integration F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ... Nature reviews microbiology 3 (11), 848-858, 2005 | 546 | 2005 |
| Transforming men into mice (polynomial algorithm for genomic distance problem) S Hannenhalli, PA Pevzner Proceedings of IEEE 36th annual foundations of computer science, 581-592, 1995 | 513 | 1995 |
| Retroviral DNA integration: viral and cellular determinants of target-site selection MK Lewinski, M Yamashita, M Emerman, A Ciuffi, H Marshall, G Crawford, ... PLoS pathogens 2 (6), e60, 2006 | 484 | 2006 |
| Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ... Journal of virology 79 (11), 6610-6619, 2005 | 345 | 2005 |
| The sequence of the human genome J Craig Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, ... Science 291 (5507), 1304-1351, 2001 | 339 | 2001 |
| Analysis and prediction of functional sub-types from protein sequence alignments SS Hannenhalli, RB Russell Journal of molecular biology 303 (1), 61-76, 2000 | 326 | 2000 |
| RNA-Seq identifies novel myocardial gene expression signatures of heart failure Y Liu, M Morley, J Brandimarto, S Hannenhalli, Y Hu, EA Ashley, ... Genomics 105 (2), 83-89, 2015 | 302 | 2015 |
| Whole-genome shotgun assembly and comparison of human genome assemblies S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ... Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004 | 277 | 2004 |
| Transcriptional genomics associates FOX transcription factors with human heart failure S Hannenhalli, ME Putt, JM Gilmore, J Wang, MS Parmacek, JA Epstein, ... Circulation 114 (12), 1269-1276, 2006 | 262 | 2006 |
| Selection of target sites for mobile DNA integration in the human genome C Berry, S Hannenhalli, J Leipzig, FD Bushman PLoS computational biology 2 (11), e157, 2006 | 258 | 2006 |
| Urea cycle dysregulation generates clinically relevant genomic and biochemical signatures JS Lee, L Adler, H Karathia, N Carmel, S Rabinovich, N Auslander, ... Cell 174 (6), 1559-1570. e22, 2018 | 252 | 2018 |
| 375-Approximation Algorithm for Sorting by Reversals P Berman, S Hannenhalli, M Karpinski European Symposium on Algorithms, 200-210, 2002 | 248 | 2002 |
| Polynomial-time algorithm for computing translocation distance between genomes S Hannenhalli Discrete applied mathematics 71 (1-3), 137-151, 1996 | 242 | 1996 |
| Fast sorting by reversal P Berman, S Hannenhalli Annual Symposium on Combinatorial Pattern Matching, 168-185, 1996 | 209 | 1996 |
| Why transcription factor binding sites are ten nucleotides long AJ Stewart, S Hannenhalli, JB Plotkin Genetics 192 (3), 973-985, 2012 | 201 | 2012 |
| Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation CM Trivedi, W Zhu, Q Wang, C Jia, HJ Kee, L Li, S Hannenhalli, ... Developmental cell 19 (3), 450-459, 2010 | 185 | 2010 |
| Genome sequence comparison and scenarios for gene rearrangements: A test case S Hannenhalli, C Chappey, EV Koonin, PA Pevzner Genomics 30 (2), 299-311, 1995 | 177 | 1995 |