| The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations T Städler, B Haubold, C Merino, W Stephan, P Pfaffelhuber Genetics 182 (1), 205-216, 2009 | 236 | 2009 |
| Convergence in distribution of random metric measure spaces (Λ-coalescent measure trees) A Greven, P Pfaffelhuber, A Winter Probability Theory and Related Fields 145 (1), 285-322, 2009 | 225 | 2009 |
| The infinitely many genes model for the distributed genome of bacteria F Baumdicker, WR Hess, P Pfaffelhuber Genome biology and evolution 4 (4), 443-456, 2012 | 136 | 2012 |
| mlRho–a program for estimating the population mutation and recombination rates from shotgun‐sequenced diploid genomes B Haubold, P Pfaffelhuber, M Lynch Molecular ecology 19, 277-284, 2010 | 117 | 2010 |
| Estimating mutation distances from unaligned genomes B Haubold, P Pfaffelhuber, M Domazet-Los˘ o, T Wiehe Journal of Computational Biology 16 (10), 1487-1500, 2009 | 113 | 2009 |
| andi: Fast and accurate estimation of evolutionary distances between closely related genomes B Haubold, F Klötzl, P Pfaffelhuber Bioinformatics 31 (8), 1169-1175, 2015 | 108 | 2015 |
| An approximate sampling formula under genetic hitchhiking A Etheridge, P Pfaffelhuber, A Wakolbinger | 87 | 2006 |
| Tree-valued Fleming–Viot dynamics with mutation and selection A Depperschmidt, A Greven, P Pfaffelhuber | 68 | 2012 |
| Tree-valued resampling dynamics martingale problems and applications A Greven, P Pfaffelhuber, A Winter Probability Theory and Related Fields 155 (3), 789-838, 2013 | 62 | 2013 |
| The process of most recent common ancestors in an evolving coalescent P Pfaffelhuber, A Wakolbinger Stochastic Processes and their Applications 116 (12), 1836-1859, 2006 | 60 | 2006 |
| Marked metric measure spaces A Depperschmidt, A Greven, P Pfaffelhuber | 57 | 2011 |
| Linkage disequilibrium under genetic hitchhiking in finite populations P Pfaffelhuber, A Lehnert, W Stephan Genetics 179 (1), 527-537, 2008 | 49 | 2008 |
| The diversity of a distributed genome in bacterial populations F Baumdicker, WR Hess, P Pfaffelhuber | 41 | 2010 |
| How often does the ratchet click? Facts, heuristics, asymptotics A Etheridge, P Pfaffelhuber, A Wakolbinger arXiv preprint arXiv:0709.2775, 2007 | 40 | 2007 |
| How to choose sets of ancestry informative markers: A supervised feature selection approach P Pfaffelhuber, F Grundner-Culemann, V Lipphardt, F Baumdicker Forensic Science International: Genetics 46, 102259, 2020 | 34 | 2020 |
| Classification of phenotypic subpopulations in isogenic bacterial cultures by triple promoter probing at single cell level JP Schlüter, P Czuppon, O Schauer, P Pfaffelhuber, M McIntosh, A Becker Journal of Biotechnology 198, 3-14, 2015 | 33 | 2015 |
| Europe’s Roma people are vulnerable to poor practice in genetics V Lipphardt, M Surdu, N Ellebrecht, P Pfaffelhuber, M Wienroth, ... Nature 599 (7885), 368-371, 2021 | 32 | 2021 |
| Alignment-free estimation of nucleotide diversity B Haubold, FA Reed, P Pfaffelhuber Bioinformatics 27 (4), 449-455, 2011 | 32 | 2011 |
| The tree length of an evolving coalescent P Pfaffelhuber, A Wakolbinger, H Weisshaupt Probability theory and related fields 151, 529-557, 2011 | 31 | 2011 |
| Selective sweeps for recessive alleles and for other modes of dominance G Ewing, J Hermisson, P Pfaffelhuber, J Rudolf Journal of mathematical biology 63 (3), 399-431, 2011 | 31 | 2011 |