Free-energy landscape of a hyperstable RNA tetraloop JC Miner, AA Chen, AE García Proceedings of the National Academy of Sciences 113 (24), 6665-6670, 2016 | 54 | 2016 |
Codonbert: Large language models for mrna design and optimization S Li, S Moayedpour, R Li, M Bailey, S Riahi, L Kogler-Anele, M Miladi, ... bioRxiv, 2023.09. 09.556981, 2023 | 24 | 2023 |
Equilibrium denaturation and preferential interactions of an RNA tetraloop with urea JC Miner, AE García The Journal of Physical Chemistry B 121 (15), 3734-3746, 2017 | 23 | 2017 |
Codonbert: Large language models for mrna design and optimization. bioRxiv S Li, S Moayedpour, R Li, M Bailey, S Riahi, L Kogler-Anele, M Miladi, ... 2023a 2 (7), 2023-09, 2023 | 11 | 2023 |
Structural transition and antibody binding of EBOV GP and ZIKV E proteins from pre-fusion to fusion-initiation state A Lappala, W Nishima, J Miner, P Fenimore, W Fischer, P Hraber, ... Biomolecules 8 (2), 25, 2018 | 9 | 2018 |
CodonBERT large language model for mRNA vaccines S Li, S Moayedpour, R Li, M Bailey, S Riahi, L Kogler-Anele, M Miladi, ... Genome research 34 (7), 1027-1035, 2024 | 7 | 2024 |
Modeling the Influenza A NP-vRNA-Polymerase Complex in Atomic Detail JC Miner, A Lappala, PW Fenimore, WM Fischer, BH McMahon, ... Biomolecules 11 (1), 124, 2021 | 7 | 2021 |
Conotoxin Prediction: New Features to Increase Prediction Accuracy LK Monroe, DP Truong, JC Miner, SH Adikari, ZJ Sasiene, PW Fenimore, ... Toxins 15 (11), 641, 2023 | 4 | 2023 |
Concentration-dependent and configuration-dependent interactions of monovalent ions with an RNA tetraloop JC Miner, AE Garcia The Journal of Chemical Physics 148 (22), 2018 | 3 | 2018 |
Insights on RGD-based peptide interactions with integrin receptors from atomistic simulations A Rammohan, J Miner, M Mckenzie Biophysical Journal 108 (2), 143a, 2015 | 2 | 2015 |
Integrative structural studies of the SARS-CoV-2 spike protein during the fusion process (2022) JC Miner, PW Fenimore, WM Fischer, BH McMahon, KY Sanbonmatsu, ... Current Research in Structural Biology 4, 220-230, 2022 | 1 | 2022 |
Conformational control via sequence for a heteropeptoid in water: coupled NMR and Rosetta modelling T Rajale, JC Miner, R Michalczyk, ML Phipps, JG Schmidt, RD Gilbertson, ... Chemical Communications 57 (77), 9922-9925, 2021 | 1 | 2021 |
Preferential interactions of K+/CL- and TMAO with a model RNA oligomer JC Miner, K Hackett Biophysical Journal 116 (3), 353a, 2019 | 1 | 2019 |
Validating Experimental Results of Cardiac Glycosides and Monoterpene Indole Alkaloids using Cheminformatics BA Kolade, JC Miner, RF Williams Biophysical Journal 120 (3), 267a, 2021 | | 2021 |
Structural transition and antibody binding of Ebola GP and Zika E proteins from pre-fusion to fusion-initiation states A Lappala-Vernon, W Nishima, JC Miner, PW Fenimore, W Fischer, ... bioRxiv, 285130, 2018 | | 2018 |
Hydration at the protein surface: Observations from high-resolution data J Miner, J Berendzen, P Fenimore ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 255, 2018 | | 2018 |
Preferential Interactions of Charged and Neutral Cosolutes with a Model RNA Hairpin JC Miner, AE Garcia Biophysical Journal 112 (3), 366a-367a, 2017 | | 2017 |
Folding studies of hyperstable RNA tetraloops through molecular dynamics JC Miner Rensselaer Polytechnic Institute, Troy, NY, 2016 | | 2016 |
Reversible folding of the GCAA hyperstable RNA tetraloop using molecular dynamics simulations A Chen, J Miner, A Garcia ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 250, 2015 | | 2015 |
Molecular Simulations Studies of RNA Tetraloop Hyperstability: The Effect of Stem Length on Folding Dynamics JC Miner, AA Chen, AE García Biophysical Journal 108 (2), 237a, 2015 | | 2015 |