In‐depth and 3‐dimensional exploration of the budding yeast phosphoproteome MC Lanz, K Yugandhar, S Gupta, EJ Sanford, VM Faça, S Vega, ... EMBO reports 22 (2), e51121, 2021 | 152 | 2021 |
A comprehensive SARS-CoV-2–human protein–protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets Y Zhou, Y Liu, S Gupta, MI Paramo, Y Hou, C Mao, Y Luo, J Judd, ... Nature biotechnology 41 (1), 128-139, 2023 | 137 | 2023 |
The long noncoding RNA ROCKI regulates inflammatory gene expression Q Zhang, TC Chao, VS Patil, Y Qin, SK Tiwari, J Chiou, A Dobin, CM Tsai, ... The EMBO journal 38 (8), e100041, 2019 | 107 | 2019 |
Inferring protein-protein interaction networks from mass spectrometry-based proteomic approaches: a mini-review K Yugandhar, S Gupta, H Yu Computational and structural biotechnology journal 17, 805-811, 2019 | 59 | 2019 |
A 3D structural SARS-CoV-2–human interactome to explore genetic and drug perturbations SD Wierbowski, S Liang, Y Liu, Y Chen, S Gupta, NM Andre, SM Lipkin, ... Nature methods 18 (12), 1477-1488, 2021 | 27 | 2021 |
Maximized quantitative phosphoproteomics allows high confidence dissection of the DNA damage signaling network VM Faca, EJ Sanford, J Tieu, W Comstock, S Gupta, S Marshall, H Yu, ... Scientific Reports 10 (1), 18056, 2020 | 19 | 2020 |
.(2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome MC Lanz, K Yugandhar, S Gupta, EJ Sanford, VM Faca, S Vega EMBO Rep 22, e51121, 0 | 6 | |
An adaptable, reusable, and light implant for chronic Neuropixels probes C Bimbard, F Takács, JA Catarino, JMJ Fabre, S Gupta, SC Lenzi, ... bioRxiv, 2024 | 5 | 2024 |
A comprehensive SARS-CoV-2-human protein-protein interactome network identifies pathobiology and host-targeting therapies for COVID-19 Y Zhou, Y Liu, S Gupta, MI Paramo, Y Hou, C Mao, Y Luo, J Judd, ... Research Square, 2022 | 2 | 2022 |
A multiscale functional map of somatic mutations in cancer integrating protein structure and network topology Y Zhang, AK Leung, JJ Kang, Y Sun, G Wu, L Li, J Sun, L Cheng, T Qiu, ... Nature Communications 16 (1), 975, 2025 | 1 | 2025 |
MAGMa: Your comprehensive tool for differential expression analysis in mass-spectrometry proteomic data S Gupta, JJ Kang, Y Sun, Y Kumar, M Wagner, W Comstock, J Booth, ... bioRxiv, 2024.06. 24.600424, 2024 | 1 | 2024 |