Alexandre M.J.J. Bonvin

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Rolf BoelensUtrecht UniversityEmail yang diverifikasi di uu.nl
Robert KapteinUtrecht UniversityEmail yang diverifikasi di uu.nl
Panagiotis KastritisProfessor of Integrative Structural Biochemistry, MLU Halle / ERA Chair for cryo-EM, NHRF, AthensEmail yang diverifikasi di bct.uni-halle.de
João PGLM RodriguesPrincipal Scientist, Schrodinger IncEmail yang diverifikasi di schrodinger.com
Sjoerd de VriesResearch Engineer, CMPLI, ParisEmail yang diverifikasi di inserm.fr
Adrien MelquiondUniversity Medical Center Utrecht, NLEmail yang diverifikasi di umcutrecht.nl
Marc van DijkSenior scientist, Vrije Universiteit AmsterdamEmail yang diverifikasi di vu.nl
Mikael TrelletFluigentEmail yang diverifikasi di fluigent.com
Ezgi KaracaAssistant Professor, Izmir Biomedicine and Genome Center & DEUEmail yang diverifikasi di ibg.edu.tr
Anna VangoneLarge Molecule Research - RocheEmail yang diverifikasi di uu.nl
Gydo Van ZundertSchrodingerEmail yang diverifikasi di schrodinger.com
Li C XueRadboud University Medical CenterEmail yang diverifikasi di radboudumc.nl
Aalt D.J. van DijkProfessor Data Analysis in the Life Sciences, University of AmsterdamEmail yang diverifikasi di uva.nl
Cunliang GengNetherlands eScience CenterEmail yang diverifikasi di esciencecenter.nl
Brian Jiménez-GarcíaCTO at Zymvol Biomodeling | ORCID 0000-0001-7786-2109Email yang diverifikasi di zymvol.com
Marc BaldusUtrecht University, Bijvoet Center for Biomolecular ResearchEmail yang diverifikasi di uu.nl
Danny HsuResearch Fellow, Institute of Biological Chemistry, Academia SinicaEmail yang diverifikasi di gate.sinica.edu.tw
Rodrigo Vargas HonoratoUtrecht University - Computational Structural Biology LabEmail yang diverifikasi di uu.nl
Nico van NulandVUB/VIBEmail yang diverifikasi di vub.ac.be
Eefjan BreukinkFull Professor, Utrecht UniversityEmail yang diverifikasi di uu.nl

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Alexandre M.J.J. Bonvin

Utrecht university

Email yang diverifikasi di uu.nl - Beranda

Biomolecular interactions docking structure and dynamics biomolecular modelling NMR spectroscopy


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
HADDOCK: a protein-protein docking approach based on biochemical or biophysical information C Dominguez, R Boelens, AMJJ Bonvin Journal of the American Chemical Society 125 (7), 1731-1737, 2003	3507	2003
The HADDOCK2. 2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes GCP van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ... Journal of molecular biology 428 (4), 720-725, 2016	2703	2016
The HADDOCK web server for data-driven biomolecular docking SJ De Vries, M Van Dijk, AMJJ Bonvin Nature protocols 5 (5), 883-897, 2010	1533	2010
PRODIGY: a web server for predicting the binding affinity of protein–protein complexes LC Xue, JP Rodrigues, PL Kastritis, AM Bonvin, A Vangone Bioinformatics 32 (23), 3676-3678, 2016	1099	2016
Refinement of protein structures in explicit solvent JP Linge, MA Williams, CAEM Spronk, AMJJ Bonvin, M Nilges Proteins: Structure, Function, and Bioinformatics 50 (3), 496-506, 2003	713	2003
The nisin–lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics STD Hsu, E Breukink, E Tischenko, MAG Lutters, B De Kruijff, R Kaptein, ... Nature structural & molecular biology 11 (10), 963-967, 2004	697	2004
HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets SJ de Vries, ADJ van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ... Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007	684	2007
Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes CG Kalodimos, N Biris, AMJJ Bonvin, MM Levandoski, M Guennuegues, ... Science 305 (5682), 386-389, 2004	625	2004
Plectasin, a fungal defensin, targets the bacterial cell wall precursor Lipid II T Schneider, T Kruse, R Wimmer, I Wiedemann, V Sass, U Pag, A Jansen, ... Science 328 (5982), 1168-1172, 2010	614	2010
On the binding affinity of macromolecular interactions: daring to ask why proteins interact PL Kastritis, AMJJ Bonvin Journal of The Royal Society Interface 10 (79), 20120835, 2013	611	2013
Contacts-based prediction of binding affinity in protein–protein complexes A Vangone, AMJJ Bonvin eLife 4, e07454, 2015	546	2015
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... Elife 3, e03430, 2014	545	2014
The α‐to‐β conformational transition of Alzheimer's Aβ‐(1–42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of β … S Tomaselli, V Esposito, P Vangone, NAJ van Nuland, AMJJ Bonvin, ... ChemBioChem 7 (2), 257-267, 2006	525	2006
Structural biology in the clouds: the WeNMR-EOSC ecosystem RV Honorato, PI Koukos, B Jiménez-García, A Tsaregorodtsev, M Verlato, ... Frontiers in Molecular Biosciences 8, 729513, 2021	524	2021
Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR I Gelis, AMJJ Bonvin, D Keramisanou, M Koukaki, G Gouridis, ... Cell 131 (4), 756-769, 2007	474	2007
Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015	468	2015
Flexible protein-protein docking AMJJ Bonvin Current opinion in structural biology 16 (2), 194-200, 2006	409	2006
Molecular dynamics simulations in drug discovery and pharmaceutical development OMH Salo-Ahen, I Alanko, R Bhadane, AMJJ Bonvin, RV Honorato, ... Processes 9 (1), 71, 2020	407	2020
RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank AJ Nederveen, JF Doreleijers, W Vranken, Z Miller, CAEM Spronk, ... PROTEINS: Structure, Function, and Bioinformatics 59 (4), 662-672, 2005	383	2005
3D-DART: a DNA structure modelling server M Van Dijk, AMJJ Bonvin Nucleic acids research 37 (suppl 2), W235-W239, 2009	381	2009

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