Tommi Vatanen

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Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthEmail yang diverifikasi di hsph.harvard.edu
Aleksandar David KosticAssistant Professor, Harvard Medical School & Joslin Diabetes CenterEmail yang diverifikasi di joslin.harvard.edu
Vallo TillmannUniversity of TartuEmail yang diverifikasi di ut.ee
Eric Alan FranzosaSenior Research Scientist / Harvard T. H. Chan School of Public HealthEmail yang diverifikasi di hsph.harvard.edu
Moran YassourThe Hebrew University of JerusalemEmail yang diverifikasi di mail.huji.ac.il
Tapani RaikoPrincipal research scientist, AppleEmail yang diverifikasi di apple.com
Matej OrešičProfessor of Medicine (Systems Medicine), Örebro University & University of TurkuEmail yang diverifikasi di oru.se
Clary ClishSenior Director, Metabolomics, Broad Institute of MIT and HarvardEmail yang diverifikasi di broadinstitute.org
kugathasan, sProfessor of Pediatrics and Human Genetics, Marcus Professor of Pediatric GastroenterologyEmail yang diverifikasi di emory.edu
Outi VaaralaRIA IMED AstraZenecaEmail yang diverifikasi di astrazeneca.com
Ismo MattilaResearch Scientist, Steno Diabetes CenterEmail yang diverifikasi di steno.dk
Paul C BlaineyBroad Institute and MIT, Department of Biological EngineeringEmail yang diverifikasi di broadinstitute.org
Yann LeCunChief AI Scientist at Facebook & Silver Professor at the Courant Institute, New York UniversityEmail yang diverifikasi di cs.nyu.edu
Harri ValpolaSystem 2 AIEmail yang diverifikasi di system2ai.com
Timo HonkelaUniversity of HelsinkiEmail yang diverifikasi di helsinki.fi
Eric MalmiStaff Research Scientist, Google DeepMindEmail yang diverifikasi di google.com
Mikael KuuselaCarnegie Mellon UniversityEmail yang diverifikasi di andrew.cmu.edu
Alexandra (Sasha) ZhernakovaProfessor of Human Genome and Exposome, University Medical Centre Groningen, The NetherlandsEmail yang diverifikasi di umcg.nl
Cisca Wijmenga, PhDERC advanced investigator; Professor of Human Genetics, Dept Genetics (MGE), UMCG, Groningen, theEmail yang diverifikasi di umcg.nl
Marc Jan BonderPostdoctoral researcher UMCGEmail yang diverifikasi di umcg.nl

Ikuti

Tommi Vatanen

Associate Professor, University of Helsinki

Email yang diverifikasi di helsinki.fi - Beranda

Human microbiome Bioinformatics Machine learning Computational systems biology Bayesian statistics


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity A Zhernakova, A Kurilshikov, MJ Bonder, EF Tigchelaar, M Schirmer, ... Science 352 (6285), 565-569, 2016	1921	2016
Temporal development of the gut microbiome in early childhood from the TEDDY study CJ Stewart, NJ Ajami, JL O’Brien, DS Hutchinson, DP Smith, MC Wong, ... Nature 562 (7728), 583-588, 2018	1817	2018
Gut microbiome structure and metabolic activity in inflammatory bowel disease EA Franzosa, A Sirota-Madi, J Avila-Pacheco, N Fornelos, HJ Haiser, ... Nature microbiology 4 (2), 293-305, 2019	1591	2019
Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans T Vatanen, AD Kostic, E d’Hennezel, H Siljander, EA Franzosa, ... Cell 165 (4), 842-853, 2016	1405	2016
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes AD Kostic, D Gevers, H Siljander, T Vatanen, T Hyötyläinen, ... Cell host & microbe 17 (2), 260-273, 2015	1290	2015
Pushing stochastic gradient towards second-order methods–backpropagation learning with transformations in nonlinearities T Vatanen, T Raiko, H Valpola, Y LeCun International Conference on Neural Information Processing, 442-449, 2013	1264	2013
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability M Yassour, T Vatanen, H Siljander, AM Hämäläinen, T Härkönen, ... Science translational medicine 8 (343), 343ra81-343ra81, 2016	1034	2016
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study T Vatanen, EA Franzosa, R Schwager, S Tripathi, TD Arthur, K Vehik, ... Nature 562 (7728), 589-594, 2018	833	2018
The effect of host genetics on the gut microbiome MJ Bonder, A Kurilshikov, EF Tigchelaar, Z Mujagic, F Imhann, AV Vila, ... Nature genetics 48 (11), 1407-1412, 2016	833	2016
Structure-based protein function prediction using graph convolutional networks V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... Nature communications 12 (1), 3168, 2021	774	2021
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients AB Hall, M Yassour, J Sauk, A Garner, X Jiang, T Arthur, GK Lagoudas, ... Genome medicine 9, 1-12, 2017	692	2017
The super-donor phenomenon in fecal microbiota transplantation BC Wilson, T Vatanen, WS Cutfield, JM O'Sullivan Frontiers in cellular and infection microbiology 9, 2, 2019	376	2019
The influence of a short-term gluten-free diet on the human gut microbiome MJ Bonder, EF Tigchelaar, X Cai, G Trynka, MC Cenit, B Hrdlickova, ... Genome medicine 8, 1-11, 2016	317	2016
Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children G Zhao, T Vatanen, L Droit, A Park, AD Kostic, TW Poon, H Vlamakis, ... Proceedings of the National Academy of Sciences 114 (30), E6166-E6175, 2017	306	2017
Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease KA Shaw, M Bertha, T Hofmekler, P Chopra, T Vatanen, A Srivatsa, ... Genome medicine 8, 1-13, 2016	302	2016
Increased intestinal microbial diversity following fecal microbiota transplant for active Crohn's disease BP Vaughn, T Vatanen, JR Allegretti, A Bai, RJ Xavier, J Korzenik, ... Inflammatory bowel diseases 22 (9), 2182-2190, 2016	251	2016
Elevated rates of horizontal gene transfer in the industrialized human microbiome M Groussin, M Poyet, A Sistiaga, SM Kearney, K Moniz, M Noel, J Hooker, ... Cell 184 (8), 2053-2067. e18, 2021	248	2021
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life T Vatanen, DR Plichta, J Somani, PC Münch, TD Arthur, AB Hall, S Rudolf, ... Nature microbiology 4 (3), 470-479, 2019	226	2019
Experimental design and quantitative analysis of microbial community multiomics H Mallick, S Ma, EA Franzosa, T Vatanen, XC Morgan, C Huttenhower Genome biology 18, 1-16, 2017	186	2017
Self-organization and missing values in SOM and GTM T Vatanen, M Osmala, T Raiko, K Lagus, M Sysi-Aho, M Orešič, T Honkela, ... Neurocomputing 147, 60-70, 2015	137	2015

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